Strain Fitness in Shewanella loihica PV-4 around Shew_3404

Experiment: Ceftazidime 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 5 mg/ml
4,053,430	-				+0.4
4,053,462	+				-0.1
4,053,492	-		Shew_3403	0.12	+0.1
4,053,514	+		Shew_3403	0.15	-0.2
4,053,522	-		Shew_3403	0.16	-0.3
4,053,542	-		Shew_3403	0.19	-0.3
4,053,773	-		Shew_3403	0.47	+0.1
4,053,795	+		Shew_3403	0.49	+0.3
4,053,901	-		Shew_3403	0.62	-0.1
4,053,901	-		Shew_3403	0.62	-0.1
4,053,976	+		Shew_3403	0.72	+0.2
4,054,043	-		Shew_3403	0.80	-0.5
4,054,558	-		Shew_3404	0.67	-1.1
4,054,685	-				+0.2
4,054,716	-				-0.4
4,054,723	+				-0.0
4,054,723	+				+0.2
4,054,723	+				+0.6
4,054,723	+				-0.4
4,054,723	+				+3.6
4,054,731	-				+0.8
4,054,731	-				-0.1
4,054,731	-				+0.1
4,054,731	-				-0.8
4,054,752	-				+0.2
4,054,859	+				+0.7
4,054,905	-				+0.6
4,054,905	-				+0.6
4,054,962	+		Shew_3405	0.12	+0.1
4,055,151	+		Shew_3405	0.23	+0.2
4,055,214	-		Shew_3405	0.27	+0.6
4,055,272	+		Shew_3405	0.31	+0.1
4,055,339	-		Shew_3405	0.35	+0.1
4,055,443	-		Shew_3405	0.41	-0.8
4,055,535	-		Shew_3405	0.47	-1.3
4,055,629	-		Shew_3405	0.53	+0.3
4,055,629	-		Shew_3405	0.53	+0.4