Strain Fitness in Shewanella loihica PV-4 around Shew_3077

Experiment: Ceftazidime 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 5 mg/ml
3,649,942	+				+0.3
3,650,100	-		Shew_3076	0.15	+0.7
3,650,135	+		Shew_3076	0.20	+0.2
3,650,539	-		Shew_3076	0.86	+0.1
3,650,555	+		Shew_3076	0.89	+0.2
3,650,614	+				+0.5
3,650,639	+				-0.1
3,650,682	-				+1.0
3,650,759	-				+1.5
3,650,916	-		Shew_3077	0.17	+0.2
3,650,933	+		Shew_3077	0.18	-0.1
3,651,100	-		Shew_3077	0.28	-0.9
3,651,265	+		Shew_3077	0.39	+0.2
3,651,265	+		Shew_3077	0.39	+0.2
3,651,265	+		Shew_3077	0.39	+0.1
3,651,265	+		Shew_3077	0.39	-0.1
3,651,273	-		Shew_3077	0.39	+0.2
3,651,273	-		Shew_3077	0.39	-0.4
3,651,624	+		Shew_3077	0.61	+0.0
3,651,684	+		Shew_3077	0.65	+0.1
3,651,814	+		Shew_3077	0.73	-0.1
3,651,822	-		Shew_3077	0.73	-1.0
3,651,934	+		Shew_3077	0.80	+0.1
3,652,050	-		Shew_3077	0.88	-0.1
3,652,381	+				-0.3
3,652,419	-				+0.6
3,652,491	-				+0.7
3,652,528	+				+0.5
3,652,528	+				-0.7
3,652,598	+		Shew_3078	0.13	+0.2
3,652,631	+		Shew_3078	0.15	-0.1
3,652,639	-		Shew_3078	0.16	-1.0
3,652,670	+		Shew_3078	0.18	+0.0
3,652,810	-		Shew_3078	0.27	+0.2
3,652,853	+		Shew_3078	0.30	-0.1
3,652,892	-		Shew_3078	0.32	+0.4
3,652,910	+		Shew_3078	0.33	+0.8
3,652,928	-		Shew_3078	0.35	-0.3
3,653,048	+		Shew_3078	0.42	+1.3
3,653,169	+		Shew_3078	0.50	+0.3