Strain Fitness in Shewanella loihica PV-4 around Shew_2848

Experiment: Ceftazidime 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 5 mg/ml
3,375,963	+	proA	Shew_2847	0.30	+0.6
3,376,069	+	proA	Shew_2847	0.38	+0.5
3,376,074	+	proA	Shew_2847	0.39	+0.5
3,376,116	-	proA	Shew_2847	0.42	+0.3
3,376,125	+	proA	Shew_2847	0.43	+0.5
3,376,216	+	proA	Shew_2847	0.50	+0.6
3,376,904	-				-0.1
3,377,084	-		Shew_2848	0.17	+0.4
3,377,159	+		Shew_2848	0.23	-0.5
3,377,167	-		Shew_2848	0.24	+0.1
3,377,167	-		Shew_2848	0.24	-0.1
3,377,370	+		Shew_2848	0.42	-0.3
3,377,528	-		Shew_2848	0.56	+0.0
3,377,693	+		Shew_2848	0.71	-1.7
3,377,936	-				-0.2
3,377,955	-				-0.1
3,377,955	-				+0.3
3,378,056	-				+0.5
3,378,162	-				+1.6
3,378,913	-		Shew_2849	0.52	-0.0
3,378,961	+		Shew_2849	0.56	+0.0
3,378,979	-		Shew_2849	0.57	-0.0
3,379,008	-		Shew_2849	0.59	-0.3