Strain Fitness in Shewanella loihica PV-4 around Shew_2778

Experiment: Ceftazidime 5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2777 and Shew_2778 are separated by 84 nucleotidesShew_2778 and Shew_2779 are separated by 327 nucleotides Shew_2777: Shew_2777 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,283,298 to 3,284,653 _2777 Shew_2778: Shew_2778 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 3,284,738 to 3,287,770 _2778 Shew_2779: Shew_2779 - amino acid ABC transporter (RefSeq), at 3,288,098 to 3,288,907 _2779 Position (kb) 3284 3285 3286 3287 3288Strain fitness (log2 ratio) -1 0 1at 3283.739 kb on - strand, within Shew_2777at 3283.764 kb on - strand, within Shew_2777at 3283.788 kb on + strand, within Shew_2777at 3283.788 kb on + strand, within Shew_2777at 3283.788 kb on + strand, within Shew_2777at 3283.796 kb on - strand, within Shew_2777at 3284.049 kb on + strand, within Shew_2777at 3284.049 kb on + strand, within Shew_2777at 3284.290 kb on - strand, within Shew_2777at 3284.494 kb on - strand, within Shew_2777at 3284.731 kb on + strandat 3284.739 kb on - strandat 3284.810 kb on - strandat 3285.060 kb on - strand, within Shew_2778at 3285.094 kb on + strand, within Shew_2778at 3285.328 kb on + strand, within Shew_2778at 3285.541 kb on + strand, within Shew_2778at 3285.676 kb on - strand, within Shew_2778at 3285.676 kb on - strand, within Shew_2778at 3285.676 kb on - strand, within Shew_2778at 3285.722 kb on + strand, within Shew_2778at 3285.730 kb on - strand, within Shew_2778at 3285.744 kb on + strand, within Shew_2778at 3285.825 kb on - strand, within Shew_2778at 3286.495 kb on - strand, within Shew_2778at 3286.760 kb on + strand, within Shew_2778at 3286.789 kb on - strand, within Shew_2778at 3287.022 kb on + strand, within Shew_2778at 3287.415 kb on + strand, within Shew_2778at 3287.562 kb on - strandat 3287.916 kb on - strandat 3288.391 kb on + strand, within Shew_2779

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml
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3,283,739 - Shew_2777 0.33 -0.1
3,283,764 - Shew_2777 0.34 -0.0
3,283,788 + Shew_2777 0.36 -0.4
3,283,788 + Shew_2777 0.36 +0.3
3,283,788 + Shew_2777 0.36 -0.0
3,283,796 - Shew_2777 0.37 -0.7
3,284,049 + Shew_2777 0.55 +0.5
3,284,049 + Shew_2777 0.55 -0.7
3,284,290 - Shew_2777 0.73 +0.4
3,284,494 - Shew_2777 0.88 +0.3
3,284,731 + +0.5
3,284,739 - -0.6
3,284,810 - -0.4
3,285,060 - Shew_2778 0.11 -0.1
3,285,094 + Shew_2778 0.12 +0.0
3,285,328 + Shew_2778 0.19 +0.0
3,285,541 + Shew_2778 0.26 +0.7
3,285,676 - Shew_2778 0.31 +0.3
3,285,676 - Shew_2778 0.31 +0.0
3,285,676 - Shew_2778 0.31 -0.4
3,285,722 + Shew_2778 0.32 -0.5
3,285,730 - Shew_2778 0.33 -0.1
3,285,744 + Shew_2778 0.33 -1.5
3,285,825 - Shew_2778 0.36 +0.1
3,286,495 - Shew_2778 0.58 +0.4
3,286,760 + Shew_2778 0.67 +0.1
3,286,789 - Shew_2778 0.68 -0.4
3,287,022 + Shew_2778 0.75 -0.3
3,287,415 + Shew_2778 0.88 -0.8
3,287,562 - -0.7
3,287,916 - +0.6
3,288,391 + Shew_2779 0.36 +1.6

Or see this region's nucleotide sequence