Strain Fitness in Shewanella loihica PV-4 around Shew_2509

Experiment: Ceftazidime 5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntclpX and clpP are separated by 84 nucleotidesclpP and tig are separated by 89 nucleotidestig and Shew_R0087 are separated by 252 nucleotidesShew_R0087 and Shew_R0088 are separated by 8 nucleotidesShew_R0088 and Shew_R0089 are separated by 63 nucleotidesShew_R0089 and Shew_2510 are separated by 347 nucleotides Shew_2507: clpX - ATP-dependent protease ATP-binding subunit (RefSeq), at 2,949,498 to 2,950,778 clpX Shew_2508: clpP - ATP-dependent Clp protease proteolytic subunit (RefSeq), at 2,950,863 to 2,951,474 clpP Shew_2509: tig - trigger factor (RefSeq), at 2,951,564 to 2,952,868 tig Shew_R0087: Shew_R0087 - tRNA-His (RefSeq), at 2,953,121 to 2,953,196 _R0087 Shew_R0088: Shew_R0088 - tRNA-Arg (RefSeq), at 2,953,205 to 2,953,281 _R0088 Shew_R0089: Shew_R0089 - tRNA-Pro (RefSeq), at 2,953,345 to 2,953,421 _R0089 Shew_2510: Shew_2510 - methylenetetrahydrofolate dehydrogenase (NADP(+)) (RefSeq), at 2,953,769 to 2,954,623 _2510 Position (kb) 2951 2952 2953Strain fitness (log2 ratio) -1 0 1at 2950.980 kb on - strand, within clpPat 2951.450 kb on - strandat 2951.795 kb on - strand, within tigat 2951.867 kb on - strand, within tigat 2952.413 kb on - strand, within tigat 2952.508 kb on + strand, within tigat 2952.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml
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2,950,980 - clpP Shew_2508 0.19 +0.9
2,951,450 - -0.1
2,951,795 - tig Shew_2509 0.18 -0.6
2,951,867 - tig Shew_2509 0.23 -0.7
2,952,413 - tig Shew_2509 0.65 -0.9
2,952,508 + tig Shew_2509 0.72 -1.4
2,952,840 - -0.9

Or see this region's nucleotide sequence