Strain Fitness in Shewanella loihica PV-4 around Shew_2352

Experiment: Ceftazidime 5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2351 and Shew_2352 are separated by 89 nucleotidesShew_2352 and Shew_2353 are separated by 74 nucleotides Shew_2351: Shew_2351 - metal dependent phosphohydrolase (RefSeq), at 2,745,324 to 2,746,589 _2351 Shew_2352: Shew_2352 - hypothetical protein (RefSeq), at 2,746,679 to 2,746,987 _2352 Shew_2353: Shew_2353 - magnesium and cobalt transport protein CorA (RefSeq), at 2,747,062 to 2,748,009 _2353 Position (kb) 2746 2747Strain fitness (log2 ratio) -3 -2 -1 0 1at 2746.859 kb on + strand, within Shew_2352at 2746.939 kb on + strand, within Shew_2352

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml
remove
2,746,859 + Shew_2352 0.58 -0.4
2,746,939 + Shew_2352 0.84 -3.2

Or see this region's nucleotide sequence