Strain Fitness in Shewanella loihica PV-4 around Shew_2167

Experiment: Ceftazidime 5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2166 and Shew_2167 are separated by 126 nucleotidesShew_2167 and Shew_2168 are separated by 21 nucleotidesShew_2168 and Shew_2169 are separated by 199 nucleotides Shew_2166: Shew_2166 - hypothetical protein (RefSeq), at 2,517,223 to 2,521,146 _2166 Shew_2167: Shew_2167 - hypothetical protein (RefSeq), at 2,521,273 to 2,521,473 _2167 Shew_2168: Shew_2168 - hypothetical protein (RefSeq), at 2,521,495 to 2,521,815 _2168 Shew_2169: Shew_2169 - hypothetical protein (RefSeq), at 2,522,015 to 2,522,944 _2169 Position (kb) 2521 2522Strain fitness (log2 ratio) -2 -1 0 1at 2520.520 kb on - strand, within Shew_2166at 2521.212 kb on + strandat 2521.306 kb on - strand, within Shew_2167at 2521.599 kb on + strand, within Shew_2168at 2521.599 kb on + strand, within Shew_2168at 2521.705 kb on + strand, within Shew_2168at 2522.376 kb on + strand, within Shew_2169

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml
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2,520,520 - Shew_2166 0.84 -2.1
2,521,212 + -0.5
2,521,306 - Shew_2167 0.16 -1.0
2,521,599 + Shew_2168 0.32 -0.0
2,521,599 + Shew_2168 0.32 +0.2
2,521,705 + Shew_2168 0.65 +0.2
2,522,376 + Shew_2169 0.39 +0.2

Or see this region's nucleotide sequence