Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1488 and Shew_1489 are separated by 118 nucleotides Shew_1489 and Shew_1490 are separated by 74 nucleotides Shew_1490 and Shew_1491 are separated by 100 nucleotides Shew_1491 and Shew_1492 are separated by 58 nucleotides
Shew_1488: Shew_1488 - FAD linked oxidase domain-containing protein (RefSeq), at 1,711,941 to 1,713,326
_1488
Shew_1489: Shew_1489 - hypothetical protein (RefSeq), at 1,713,445 to 1,714,035
_1489
Shew_1490: Shew_1490 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 1,714,110 to 1,714,694
_1490
Shew_1491: Shew_1491 - Ion transport protein (RefSeq), at 1,714,795 to 1,715,622
_1491
Shew_1492: Shew_1492 - MATE efflux family protein (RefSeq), at 1,715,681 to 1,717,168
_1492
Position (kb)
1714
1715 Strain fitness (log2 ratio)
-1
0
1 at 1713.505 kb on - strand, within Shew_1489 at 1713.690 kb on + strand, within Shew_1489 at 1713.707 kb on + strand, within Shew_1489 at 1713.733 kb on - strand, within Shew_1489 at 1713.863 kb on - strand, within Shew_1489 at 1713.938 kb on - strand, within Shew_1489 at 1713.974 kb on + strand, within Shew_1489 at 1714.458 kb on - strand, within Shew_1490
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 1,713,505 - Shew_1489 0.10 +0.5 1,713,690 + Shew_1489 0.41 -0.4 1,713,707 + Shew_1489 0.44 +0.8 1,713,733 - Shew_1489 0.49 -0.1 1,713,863 - Shew_1489 0.71 -0.7 1,713,938 - Shew_1489 0.83 -0.2 1,713,974 + Shew_1489 0.90 -0.1 1,714,458 - Shew_1490 0.59 -1.5
Or see this region's nucleotide sequence