Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1235 and Shew_1236 are separated by 67 nucleotides Shew_1236 and Shew_1237 are separated by 91 nucleotides Shew_1237 and Shew_1238 are separated by 110 nucleotides Shew_1238 and Shew_1239 overlap by 4 nucleotides
Shew_1235: Shew_1235 - hypothetical protein (RefSeq), at 1,435,986 to 1,436,885
_1235
Shew_1236: Shew_1236 - OsmC family protein (RefSeq), at 1,436,953 to 1,437,471
_1236
Shew_1237: Shew_1237 - hypothetical protein (RefSeq), at 1,437,563 to 1,437,841
_1237
Shew_1238: Shew_1238 - hypothetical protein (RefSeq), at 1,437,952 to 1,438,314
_1238
Shew_1239: Shew_1239 - PepSY-associated TM helix domain-containing protein (RefSeq), at 1,438,311 to 1,440,023
_1239
Position (kb) 1436
1437
1438 Strain fitness (log2 ratio) -1
0
1 at 1436.362 kb on + strand, within Shew_1235 at 1436.375 kb on - strand, within Shew_1235 at 1436.385 kb on - strand, within Shew_1235 at 1436.952 kb on - strand at 1437.323 kb on + strand, within Shew_1236 at 1437.406 kb on + strand, within Shew_1236 at 1438.353 kb on + strand at 1438.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 1,436,362 + Shew_1235 0.42 +0.1 1,436,375 - Shew_1235 0.43 -0.5 1,436,385 - Shew_1235 0.44 -0.1 1,436,952 - +0.0 1,437,323 + Shew_1236 0.71 +0.8 1,437,406 + Shew_1236 0.87 +0.5 1,438,353 + +0.1 1,438,399 - -0.7
Or see this region's nucleotide sequence