Strain Fitness in Shewanella loihica PV-4 around Shew_0850

Experiment: Ceftazidime 5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0849 and Shew_0850 are separated by 184 nucleotidesShew_0850 and Shew_0851 are separated by 347 nucleotides Shew_0849: Shew_0849 - TPR repeat-containing protein (RefSeq), at 971,524 to 972,705 _0849 Shew_0850: Shew_0850 - hypothetical protein (RefSeq), at 972,890 to 973,717 _0850 Shew_0851: Shew_0851 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 974,065 to 975,117 _0851 Position (kb) 972 973 974Strain fitness (log2 ratio) -1 0 1at 971.984 kb on - strand, within Shew_0849at 972.189 kb on + strand, within Shew_0849at 972.189 kb on + strand, within Shew_0849at 972.197 kb on - strand, within Shew_0849at 972.197 kb on - strand, within Shew_0849at 972.200 kb on + strand, within Shew_0849at 972.261 kb on + strand, within Shew_0849at 972.267 kb on - strand, within Shew_0849at 972.310 kb on - strand, within Shew_0849at 972.356 kb on - strand, within Shew_0849at 972.383 kb on + strand, within Shew_0849at 972.383 kb on + strand, within Shew_0849at 972.383 kb on + strand, within Shew_0849at 972.391 kb on - strand, within Shew_0849at 972.391 kb on - strand, within Shew_0849at 972.413 kb on + strand, within Shew_0849at 972.506 kb on + strand, within Shew_0849at 972.530 kb on - strand, within Shew_0849at 972.559 kb on - strand, within Shew_0849at 972.561 kb on + strand, within Shew_0849at 972.569 kb on - strand, within Shew_0849at 972.569 kb on - strand, within Shew_0849at 972.596 kb on + strandat 972.596 kb on + strandat 972.596 kb on + strandat 972.604 kb on - strandat 972.604 kb on - strandat 972.676 kb on - strandat 972.692 kb on - strandat 972.802 kb on - strandat 972.817 kb on + strandat 972.826 kb on - strandat 972.873 kb on + strandat 972.881 kb on - strandat 972.901 kb on - strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.936 kb on + strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.944 kb on - strandat 972.974 kb on - strand, within Shew_0850at 973.051 kb on - strand, within Shew_0850at 973.070 kb on - strand, within Shew_0850at 973.086 kb on + strand, within Shew_0850at 973.089 kb on - strand, within Shew_0850at 973.387 kb on + strand, within Shew_0850at 973.458 kb on + strand, within Shew_0850at 973.544 kb on - strand, within Shew_0850at 973.552 kb on - strand, within Shew_0850at 973.744 kb on + strandat 973.780 kb on - strandat 973.788 kb on + strandat 973.882 kb on + strandat 974.019 kb on + strandat 974.020 kb on - strandat 974.020 kb on - strandat 974.020 kb on - strandat 974.020 kb on - strandat 974.112 kb on + strandat 974.124 kb on + strandat 974.246 kb on + strand, within Shew_0851at 974.266 kb on - strand, within Shew_0851at 974.266 kb on - strand, within Shew_0851at 974.318 kb on - strand, within Shew_0851at 974.373 kb on - strand, within Shew_0851at 974.373 kb on - strand, within Shew_0851at 974.375 kb on + strand, within Shew_0851at 974.395 kb on - strand, within Shew_0851at 974.438 kb on - strand, within Shew_0851at 974.601 kb on + strand, within Shew_0851at 974.601 kb on + strand, within Shew_0851at 974.609 kb on - strand, within Shew_0851at 974.609 kb on - strand, within Shew_0851at 974.653 kb on + strand, within Shew_0851at 974.713 kb on - strand, within Shew_0851

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml
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971,984 - Shew_0849 0.39 -0.2
972,189 + Shew_0849 0.56 -0.0
972,189 + Shew_0849 0.56 +0.1
972,197 - Shew_0849 0.57 +0.8
972,197 - Shew_0849 0.57 +0.1
972,200 + Shew_0849 0.57 +0.1
972,261 + Shew_0849 0.62 +0.9
972,267 - Shew_0849 0.63 +1.0
972,310 - Shew_0849 0.66 +0.2
972,356 - Shew_0849 0.70 -0.1
972,383 + Shew_0849 0.73 +0.7
972,383 + Shew_0849 0.73 +0.5
972,383 + Shew_0849 0.73 -1.5
972,391 - Shew_0849 0.73 -0.0
972,391 - Shew_0849 0.73 -0.0
972,413 + Shew_0849 0.75 +0.5
972,506 + Shew_0849 0.83 +0.5
972,530 - Shew_0849 0.85 +0.0
972,559 - Shew_0849 0.88 +1.1
972,561 + Shew_0849 0.88 -0.2
972,569 - Shew_0849 0.88 -0.7
972,569 - Shew_0849 0.88 -0.5
972,596 + +0.7
972,596 + -0.8
972,596 + +0.1
972,604 - +1.6
972,604 - +0.4
972,676 - +0.3
972,692 - -0.0
972,802 - +1.3
972,817 + +0.1
972,826 - -0.7
972,873 + -0.4
972,881 - +0.2
972,901 - -0.3
972,936 + -1.2
972,936 + +0.3
972,936 + -0.7
972,936 + -0.1
972,936 + +1.5
972,936 + +0.1
972,936 + -0.4
972,944 - -0.8
972,944 - -0.3
972,944 - -0.2
972,944 - -0.0
972,944 - +1.6
972,944 - +0.5
972,944 - +0.0
972,944 - -0.6
972,974 - Shew_0850 0.10 +0.1
973,051 - Shew_0850 0.19 -0.5
973,070 - Shew_0850 0.22 -0.5
973,086 + Shew_0850 0.24 -0.1
973,089 - Shew_0850 0.24 -0.2
973,387 + Shew_0850 0.60 -0.1
973,458 + Shew_0850 0.69 +0.1
973,544 - Shew_0850 0.79 -0.1
973,552 - Shew_0850 0.80 -0.4
973,744 + +1.0
973,780 - +0.1
973,788 + +0.3
973,882 + +0.2
974,019 + +0.8
974,020 - +0.1
974,020 - +0.7
974,020 - +0.7
974,020 - -0.4
974,112 + +0.4
974,124 + +0.3
974,246 + Shew_0851 0.17 +0.0
974,266 - Shew_0851 0.19 +0.2
974,266 - Shew_0851 0.19 +0.3
974,318 - Shew_0851 0.24 +0.5
974,373 - Shew_0851 0.29 +0.2
974,373 - Shew_0851 0.29 +0.5
974,375 + Shew_0851 0.29 +0.2
974,395 - Shew_0851 0.31 -0.1
974,438 - Shew_0851 0.35 +0.3
974,601 + Shew_0851 0.51 -0.2
974,601 + Shew_0851 0.51 +0.4
974,609 - Shew_0851 0.52 +0.1
974,609 - Shew_0851 0.52 +0.3
974,653 + Shew_0851 0.56 -0.0
974,713 - Shew_0851 0.62 +0.3

Or see this region's nucleotide sequence