Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0826 and Shew_0827 are separated by 110 nucleotides Shew_0827 and Shew_0828 are separated by 4 nucleotides Shew_0828 and Shew_0829 are separated by 100 nucleotides Shew_0829 and Shew_0830 are separated by 13 nucleotides
Shew_0826: Shew_0826 - hypothetical protein (RefSeq), at 949,026 to 949,949
_0826
Shew_0827: Shew_0827 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 950,060 to 950,707
_0827
Shew_0828: Shew_0828 - LysR family transcriptional regulator (RefSeq), at 950,712 to 951,605
_0828
Shew_0829: Shew_0829 - LrgA family protein (RefSeq), at 951,706 to 952,125
_0829
Shew_0830: Shew_0830 - LrgB family protein (RefSeq), at 952,139 to 952,828
_0830
Position (kb) 950
951
952 Strain fitness (log2 ratio) -2
-1
0
1 at 949.761 kb on + strand, within Shew_0826 at 949.796 kb on + strand, within Shew_0826 at 949.845 kb on + strand, within Shew_0826 at 949.853 kb on - strand, within Shew_0826 at 950.145 kb on - strand, within Shew_0827 at 950.676 kb on + strand at 950.696 kb on - strand at 951.502 kb on + strand, within Shew_0828 at 951.549 kb on + strand at 951.987 kb on + strand, within Shew_0829 at 952.010 kb on + strand, within Shew_0829 at 952.010 kb on - strand, within Shew_0829 at 952.018 kb on - strand, within Shew_0829 at 952.196 kb on - strand at 952.196 kb on - strand at 952.435 kb on - strand, within Shew_0830 at 952.501 kb on + strand, within Shew_0830
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 949,761 + Shew_0826 0.80 +0.0 949,796 + Shew_0826 0.83 +0.3 949,845 + Shew_0826 0.89 -0.8 949,853 - Shew_0826 0.90 -0.1 950,145 - Shew_0827 0.13 -0.7 950,676 + +0.5 950,696 - +0.6 951,502 + Shew_0828 0.88 -1.4 951,549 + -0.0 951,987 + Shew_0829 0.67 -0.2 952,010 + Shew_0829 0.72 +0.1 952,010 - Shew_0829 0.72 -0.3 952,018 - Shew_0829 0.74 +0.1 952,196 - -1.3 952,196 - -0.0 952,435 - Shew_0830 0.43 -0.3 952,501 + Shew_0830 0.52 -2.0
Or see this region's nucleotide sequence