Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysS and Shew_0813 are separated by 265 nucleotides Shew_0813 and Shew_0814 are separated by 44 nucleotides Shew_0814 and Shew_0815 are separated by 357 nucleotides
Shew_0812: lysS - lysyl-tRNA synthetase (RefSeq), at 933,950 to 935,452
lysS
Shew_0813: Shew_0813 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 935,718 to 938,231
_0813
Shew_0814: Shew_0814 - pseudouridine synthase (RefSeq), at 938,276 to 938,824
_0814
Shew_0815: Shew_0815 - Glucosamine-6-phosphate deaminase (EC 3.5.99.6) <small>(from data)</small>, at 939,182 to 939,988
_0815
Position (kb) 935
936
937
938
939 Strain fitness (log2 ratio) -1
0
1 at 935.799 kb on + strand at 935.935 kb on - strand at 936.154 kb on - strand, within Shew_0813 at 936.163 kb on - strand, within Shew_0813 at 936.361 kb on + strand, within Shew_0813 at 937.180 kb on + strand, within Shew_0813 at 937.563 kb on - strand, within Shew_0813 at 938.168 kb on + strand at 938.210 kb on - strand at 938.281 kb on - strand at 938.372 kb on + strand, within Shew_0814 at 938.777 kb on - strand at 939.056 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 935,799 + +0.2 935,935 - +0.4 936,154 - Shew_0813 0.17 -0.7 936,163 - Shew_0813 0.18 +0.1 936,361 + Shew_0813 0.26 -0.0 937,180 + Shew_0813 0.58 -0.3 937,563 - Shew_0813 0.73 -0.5 938,168 + +0.6 938,210 - +0.3 938,281 - +1.2 938,372 + Shew_0814 0.17 +0.1 938,777 - -0.1 939,056 + +0.9
Or see this region's nucleotide sequence