Strain Fitness in Shewanella loihica PV-4 around Shew_0786

Experiment: Ceftazidime 5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0783 and Shew_0784 are separated by 93 nucleotidesShew_0784 and Shew_0785 are separated by 25 nucleotidesShew_0785 and Shew_0786 overlap by 26 nucleotidesShew_0786 and Shew_0787 are separated by 218 nucleotides Shew_0783: Shew_0783 - pseudouridylate synthase (RefSeq), at 897,390 to 898,067 _0783 Shew_0784: Shew_0784 - hypothetical protein (RefSeq), at 898,161 to 898,448 _0784 Shew_0785: Shew_0785 - methyltransferase type 12 (RefSeq), at 898,474 to 899,004 _0785 Shew_0786: Shew_0786 - hypothetical protein (RefSeq), at 898,979 to 899,395 _0786 Shew_0787: Shew_0787 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 899,614 to 900,603 _0787 Position (kb) 898 899 900Strain fitness (log2 ratio) -1 0 1 2at 899.095 kb on + strand, within Shew_0786at 899.270 kb on - strand, within Shew_0786at 900.148 kb on - strand, within Shew_0787at 900.300 kb on + strand, within Shew_0787at 900.380 kb on + strand, within Shew_0787at 900.388 kb on - strand, within Shew_0787

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml
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899,095 + Shew_0786 0.28 +0.3
899,270 - Shew_0786 0.70 -0.9
900,148 - Shew_0787 0.54 -1.0
900,300 + Shew_0787 0.69 +2.6
900,380 + Shew_0787 0.77 +0.2
900,388 - Shew_0787 0.78 +0.5

Or see this region's nucleotide sequence