Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0601 and Shew_0602 are separated by 835 nucleotides Shew_0602 and Shew_0603 are separated by 24 nucleotides Shew_0603 and Shew_0604 are separated by 173 nucleotides
Shew_0601: Shew_0601 - hypothetical protein (RefSeq), at 680,283 to 680,669
_0601
Shew_0602: Shew_0602 - methyltransferase type 12 (RefSeq), at 681,505 to 682,158
_0602
Shew_0603: Shew_0603 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 682,183 to 682,602
_0603
Shew_0604: Shew_0604 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 682,776 to 684,251
_0604
Position (kb) 681
682
683 Strain fitness (log2 ratio) -1
0
1
2 at 680.532 kb on + strand, within Shew_0601 at 680.538 kb on + strand, within Shew_0601 at 680.546 kb on - strand, within Shew_0601 at 680.561 kb on + strand, within Shew_0601 at 680.574 kb on - strand, within Shew_0601 at 680.660 kb on - strand at 680.706 kb on - strand at 680.725 kb on + strand at 680.733 kb on - strand at 680.733 kb on + strand at 680.733 kb on - strand at 680.733 kb on - strand at 680.992 kb on - strand at 681.145 kb on + strand at 681.153 kb on - strand at 681.153 kb on - strand at 681.153 kb on - strand at 681.153 kb on - strand at 681.156 kb on + strand at 681.166 kb on - strand at 681.225 kb on + strand at 681.288 kb on + strand at 681.293 kb on + strand at 681.695 kb on - strand, within Shew_0602 at 681.793 kb on + strand, within Shew_0602 at 681.950 kb on - strand, within Shew_0602 at 681.999 kb on - strand, within Shew_0602 at 682.135 kb on - strand at 682.140 kb on - strand at 682.229 kb on + strand, within Shew_0603 at 682.309 kb on + strand, within Shew_0603 at 682.318 kb on + strand, within Shew_0603 at 682.813 kb on - strand at 682.938 kb on + strand, within Shew_0604 at 682.946 kb on - strand, within Shew_0604 at 682.990 kb on - strand, within Shew_0604 at 683.068 kb on + strand, within Shew_0604 at 683.107 kb on - strand, within Shew_0604
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 680,532 + Shew_0601 0.64 +0.1 680,538 + Shew_0601 0.66 +1.9 680,546 - Shew_0601 0.68 -0.2 680,561 + Shew_0601 0.72 -0.3 680,574 - Shew_0601 0.75 +0.7 680,660 - -0.2 680,706 - -0.2 680,725 + +0.9 680,733 - +0.1 680,733 + +0.3 680,733 - +0.1 680,733 - +0.2 680,992 - -0.2 681,145 + -0.4 681,153 - -1.5 681,153 - +0.5 681,153 - -0.2 681,153 - +0.4 681,156 + +0.6 681,166 - +0.8 681,225 + -0.8 681,288 + -0.3 681,293 + -0.2 681,695 - Shew_0602 0.29 +0.9 681,793 + Shew_0602 0.44 -0.0 681,950 - Shew_0602 0.68 +0.6 681,999 - Shew_0602 0.76 +0.0 682,135 - -0.8 682,140 - +0.3 682,229 + Shew_0603 0.11 +0.4 682,309 + Shew_0603 0.30 -0.3 682,318 + Shew_0603 0.32 -0.0 682,813 - +0.5 682,938 + Shew_0604 0.11 -0.1 682,946 - Shew_0604 0.12 -0.1 682,990 - Shew_0604 0.14 -0.2 683,068 + Shew_0604 0.20 +0.5 683,107 - Shew_0604 0.22 -1.3
Or see this region's nucleotide sequence