Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0457 and Shew_0458 are separated by 365 nucleotides Shew_0458 and Shew_0459 are separated by 240 nucleotides
Shew_0457: Shew_0457 - ATP-dependent helicase HepA (RefSeq), at 507,362 to 510,268
_0457
Shew_0458: Shew_0458 - PhoH family protein (RefSeq), at 510,634 to 512,028
_0458
Shew_0459: Shew_0459 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 512,269 to 515,961
_0459
Position (kb) 510
511
512
513 Strain fitness (log2 ratio) -1
0
1
2 at 509.721 kb on + strand, within Shew_0457 at 509.768 kb on + strand, within Shew_0457 at 509.787 kb on - strand, within Shew_0457 at 509.828 kb on + strand, within Shew_0457 at 509.842 kb on + strand, within Shew_0457 at 509.985 kb on - strand at 510.243 kb on - strand at 510.623 kb on - strand at 510.740 kb on - strand at 510.740 kb on - strand at 510.848 kb on - strand, within Shew_0458 at 510.987 kb on + strand, within Shew_0458 at 510.995 kb on - strand, within Shew_0458 at 511.065 kb on + strand, within Shew_0458 at 511.310 kb on + strand, within Shew_0458 at 511.310 kb on + strand, within Shew_0458 at 511.409 kb on - strand, within Shew_0458 at 511.521 kb on - strand, within Shew_0458 at 511.663 kb on - strand, within Shew_0458 at 511.663 kb on + strand, within Shew_0458 at 511.850 kb on + strand, within Shew_0458 at 511.860 kb on + strand, within Shew_0458 at 511.913 kb on + strand at 511.921 kb on - strand at 511.923 kb on + strand at 511.931 kb on - strand at 512.133 kb on - strand at 512.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 509,721 + Shew_0457 0.81 -0.2 509,768 + Shew_0457 0.83 +1.8 509,787 - Shew_0457 0.83 +0.8 509,828 + Shew_0457 0.85 +0.2 509,842 + Shew_0457 0.85 -0.9 509,985 - +0.3 510,243 - +0.5 510,623 - +1.1 510,740 - +0.3 510,740 - +0.6 510,848 - Shew_0458 0.15 +0.1 510,987 + Shew_0458 0.25 +0.5 510,995 - Shew_0458 0.26 -1.5 511,065 + Shew_0458 0.31 -0.7 511,310 + Shew_0458 0.48 -0.2 511,310 + Shew_0458 0.48 -0.4 511,409 - Shew_0458 0.56 +0.1 511,521 - Shew_0458 0.64 -0.1 511,663 - Shew_0458 0.74 +0.5 511,663 + Shew_0458 0.74 +0.4 511,850 + Shew_0458 0.87 +0.3 511,860 + Shew_0458 0.88 -0.4 511,913 + +0.2 511,921 - -0.1 511,923 + +0.5 511,931 - +0.2 512,133 - -0.2 512,140 - +0.2
Or see this region's nucleotide sequence