Experiment: Ceftazidime 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0314 and Shew_0315 are separated by 284 nucleotides Shew_0315 and Shew_0316 overlap by 4 nucleotides
Shew_0314: Shew_0314 - putative outer membrane adhesin like proteiin (RefSeq), at 355,622 to 360,283
_0314
Shew_0315: Shew_0315 - HemY domain-containing protein (RefSeq), at 360,568 to 361,734
_0315
Shew_0316: Shew_0316 - protein of unknown function DUF513, hemX (RefSeq), at 361,731 to 362,873
_0316
Position (kb) 360
361
362 Strain fitness (log2 ratio) -1
0
1 at 359.624 kb on + strand, within Shew_0314 at 359.626 kb on - strand, within Shew_0314 at 359.640 kb on + strand, within Shew_0314 at 359.666 kb on + strand, within Shew_0314 at 359.690 kb on - strand, within Shew_0314 at 359.690 kb on - strand, within Shew_0314 at 359.876 kb on + strand at 360.218 kb on - strand at 360.228 kb on + strand at 360.246 kb on + strand at 360.287 kb on - strand at 360.365 kb on + strand at 360.365 kb on - strand at 360.365 kb on + strand at 360.365 kb on + strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.483 kb on - strand at 361.178 kb on + strand, within Shew_0315 at 361.453 kb on + strand, within Shew_0315 at 361.770 kb on + strand at 361.962 kb on - strand, within Shew_0316 at 362.185 kb on - strand, within Shew_0316 at 362.185 kb on - strand, within Shew_0316 at 362.234 kb on - strand, within Shew_0316 at 362.452 kb on + strand, within Shew_0316 at 362.558 kb on + strand, within Shew_0316
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 5 mg/ml remove 359,624 + Shew_0314 0.86 -0.2 359,626 - Shew_0314 0.86 -0.1 359,640 + Shew_0314 0.86 +1.0 359,666 + Shew_0314 0.87 +0.1 359,690 - Shew_0314 0.87 -1.5 359,690 - Shew_0314 0.87 +0.0 359,876 + +0.1 360,218 - +0.3 360,228 + +0.5 360,246 + +1.2 360,287 - -0.4 360,365 + -0.9 360,365 - -0.3 360,365 + +0.6 360,365 + +0.7 360,373 - -0.1 360,373 - +0.8 360,373 - +0.9 360,373 - +0.3 360,483 - +0.0 361,178 + Shew_0315 0.52 -1.1 361,453 + Shew_0315 0.76 -0.4 361,770 + +0.1 361,962 - Shew_0316 0.20 -0.7 362,185 - Shew_0316 0.40 +1.0 362,185 - Shew_0316 0.40 -1.6 362,234 - Shew_0316 0.44 -1.2 362,452 + Shew_0316 0.63 -0.6 362,558 + Shew_0316 0.72 -0.8
Or see this region's nucleotide sequence