Strain Fitness in Shewanella loihica PV-4 around Shew_0108

Experiment: Ceftazidime 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 5 mg/ml
117,544	-		Shew_0107	0.30	-1.2
117,687	+		Shew_0107	0.40	+0.1
117,898	+		Shew_0107	0.56	-0.2
117,898	+		Shew_0107	0.56	-1.4
117,969	+		Shew_0107	0.61	-0.4
117,998	+		Shew_0107	0.63	-0.7
118,352	+		Shew_0107	0.90	-1.7
118,608	+				+0.8
118,608	+				+0.4
118,608	+				+0.4
118,608	+				+0.1
118,608	+				+0.9
118,616	-				+0.8
118,616	-				+0.7
118,616	-				+1.5
118,616	-				+0.5
118,616	-				+0.9
118,623	+		Shew_0108	0.10	+0.7
118,794	+		Shew_0108	0.27	+0.9
118,845	+		Shew_0108	0.32	+1.4
118,911	+		Shew_0108	0.38	+1.1
119,256	-		Shew_0108	0.71	+0.6
119,290	+		Shew_0108	0.74	+1.0
119,400	-		Shew_0108	0.85	+1.1
119,422	-		Shew_0108	0.87	+0.6
119,467	+				+0.9
119,482	-				+1.2
119,482	-				-0.6
119,555	-				+0.2
119,572	-				-0.1
119,759	-		Shew_0109	0.13	-0.2
119,785	+		Shew_0109	0.16	-0.0
119,793	-		Shew_0109	0.17	+0.1
119,793	-		Shew_0109	0.17	+0.2
119,907	-		Shew_0109	0.28	+0.4
120,308	+		Shew_0109	0.66	-0.1
120,518	+		Shew_0109	0.86	+0.1
120,523	+		Shew_0109	0.86	+0.3
120,531	-		Shew_0109	0.87	+0.3