Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4721

Experiment: L-Lysine 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4720 and Pf6N2E2_4721 are separated by 135 nucleotidesPf6N2E2_4721 and Pf6N2E2_4722 are separated by 221 nucleotides Pf6N2E2_4720 - Sarcosine oxidase alpha subunit (EC 1.5.3.1), at 5,456,786 to 5,459,803 _4720 Pf6N2E2_4721 - Sarcosine oxidase gamma subunit (EC 1.5.3.1), at 5,459,939 to 5,460,571 _4721 Pf6N2E2_4722 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 5,460,793 to 5,461,650 _4722 Position (kb) 5459 5460 5461Strain fitness (log2 ratio) -2 -1 0 1 2at 5459.027 kb on + strand, within Pf6N2E2_4720at 5459.028 kb on - strand, within Pf6N2E2_4720at 5459.028 kb on - strand, within Pf6N2E2_4720at 5459.028 kb on - strand, within Pf6N2E2_4720at 5459.060 kb on + strand, within Pf6N2E2_4720at 5459.060 kb on + strand, within Pf6N2E2_4720at 5459.060 kb on + strand, within Pf6N2E2_4720at 5459.060 kb on + strand, within Pf6N2E2_4720at 5459.060 kb on + strand, within Pf6N2E2_4720at 5459.061 kb on - strand, within Pf6N2E2_4720at 5459.061 kb on - strand, within Pf6N2E2_4720at 5459.249 kb on + strand, within Pf6N2E2_4720at 5459.249 kb on + strand, within Pf6N2E2_4720at 5459.273 kb on + strand, within Pf6N2E2_4720at 5459.318 kb on + strand, within Pf6N2E2_4720at 5459.318 kb on + strand, within Pf6N2E2_4720at 5459.318 kb on + strand, within Pf6N2E2_4720at 5459.319 kb on - strand, within Pf6N2E2_4720at 5459.319 kb on - strand, within Pf6N2E2_4720at 5459.334 kb on - strand, within Pf6N2E2_4720at 5459.355 kb on + strand, within Pf6N2E2_4720at 5459.355 kb on + strand, within Pf6N2E2_4720at 5459.355 kb on + strand, within Pf6N2E2_4720at 5459.355 kb on + strand, within Pf6N2E2_4720at 5459.355 kb on + strand, within Pf6N2E2_4720at 5459.355 kb on + strand, within Pf6N2E2_4720at 5459.355 kb on + strand, within Pf6N2E2_4720at 5459.356 kb on - strand, within Pf6N2E2_4720at 5459.356 kb on - strand, within Pf6N2E2_4720at 5459.356 kb on - strand, within Pf6N2E2_4720at 5459.356 kb on - strand, within Pf6N2E2_4720at 5459.442 kb on + strand, within Pf6N2E2_4720at 5459.636 kb on + strandat 5459.636 kb on + strandat 5459.636 kb on + strandat 5459.636 kb on + strandat 5459.636 kb on + strandat 5459.637 kb on - strandat 5459.637 kb on - strandat 5459.797 kb on + strandat 5459.920 kb on + strandat 5459.957 kb on + strandat 5459.957 kb on + strandat 5459.958 kb on - strandat 5459.958 kb on - strandat 5460.384 kb on - strand, within Pf6N2E2_4721at 5460.384 kb on - strand, within Pf6N2E2_4721at 5460.384 kb on - strand, within Pf6N2E2_4721at 5460.384 kb on - strand, within Pf6N2E2_4721at 5460.384 kb on - strand, within Pf6N2E2_4721at 5460.384 kb on - strand, within Pf6N2E2_4721at 5460.384 kb on - strand, within Pf6N2E2_4721at 5460.582 kb on + strandat 5460.583 kb on - strandat 5460.613 kb on + strandat 5460.674 kb on + strandat 5460.675 kb on - strandat 5460.728 kb on - strandat 5460.728 kb on - strandat 5460.772 kb on + strandat 5460.850 kb on - strandat 5460.892 kb on + strand, within Pf6N2E2_4722at 5461.026 kb on + strand, within Pf6N2E2_4722at 5461.213 kb on + strand, within Pf6N2E2_4722at 5461.214 kb on - strand, within Pf6N2E2_4722at 5461.214 kb on - strand, within Pf6N2E2_4722at 5461.214 kb on - strand, within Pf6N2E2_4722at 5461.214 kb on - strand, within Pf6N2E2_4722at 5461.312 kb on + strand, within Pf6N2E2_4722at 5461.423 kb on + strand, within Pf6N2E2_4722at 5461.423 kb on + strand, within Pf6N2E2_4722at 5461.423 kb on + strand, within Pf6N2E2_4722at 5461.462 kb on + strand, within Pf6N2E2_4722at 5461.462 kb on + strand, within Pf6N2E2_4722at 5461.462 kb on + strand, within Pf6N2E2_4722at 5461.462 kb on + strand, within Pf6N2E2_4722at 5461.462 kb on + strand, within Pf6N2E2_4722at 5461.462 kb on + strand, within Pf6N2E2_4722at 5461.463 kb on - strand, within Pf6N2E2_4722at 5461.463 kb on - strand, within Pf6N2E2_4722at 5461.463 kb on - strand, within Pf6N2E2_4722at 5461.531 kb on + strand, within Pf6N2E2_4722

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 25 mM
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5,459,027 + Pf6N2E2_4720 0.74 +0.4
5,459,028 - Pf6N2E2_4720 0.74 +0.2
5,459,028 - Pf6N2E2_4720 0.74 -1.0
5,459,028 - Pf6N2E2_4720 0.74 +0.1
5,459,060 + Pf6N2E2_4720 0.75 -0.9
5,459,060 + Pf6N2E2_4720 0.75 +0.8
5,459,060 + Pf6N2E2_4720 0.75 -1.3
5,459,060 + Pf6N2E2_4720 0.75 -0.2
5,459,060 + Pf6N2E2_4720 0.75 -1.0
5,459,061 - Pf6N2E2_4720 0.75 -0.8
5,459,061 - Pf6N2E2_4720 0.75 -0.4
5,459,249 + Pf6N2E2_4720 0.82 -0.5
5,459,249 + Pf6N2E2_4720 0.82 -0.8
5,459,273 + Pf6N2E2_4720 0.82 +1.4
5,459,318 + Pf6N2E2_4720 0.84 +0.5
5,459,318 + Pf6N2E2_4720 0.84 +0.2
5,459,318 + Pf6N2E2_4720 0.84 -0.1
5,459,319 - Pf6N2E2_4720 0.84 +0.4
5,459,319 - Pf6N2E2_4720 0.84 +0.1
5,459,334 - Pf6N2E2_4720 0.84 +0.5
5,459,355 + Pf6N2E2_4720 0.85 +0.1
5,459,355 + Pf6N2E2_4720 0.85 -0.2
5,459,355 + Pf6N2E2_4720 0.85 +0.2
5,459,355 + Pf6N2E2_4720 0.85 -0.1
5,459,355 + Pf6N2E2_4720 0.85 +0.6
5,459,355 + Pf6N2E2_4720 0.85 +0.5
5,459,355 + Pf6N2E2_4720 0.85 +0.2
5,459,356 - Pf6N2E2_4720 0.85 +0.2
5,459,356 - Pf6N2E2_4720 0.85 +0.3
5,459,356 - Pf6N2E2_4720 0.85 -0.0
5,459,356 - Pf6N2E2_4720 0.85 -0.7
5,459,442 + Pf6N2E2_4720 0.88 -0.8
5,459,636 + +0.2
5,459,636 + -0.1
5,459,636 + +0.5
5,459,636 + +0.3
5,459,636 + -0.3
5,459,637 - -0.2
5,459,637 - -0.3
5,459,797 + -0.2
5,459,920 + -0.4
5,459,957 + -0.5
5,459,957 + +0.8
5,459,958 - +0.3
5,459,958 - +0.5
5,460,384 - Pf6N2E2_4721 0.70 +0.4
5,460,384 - Pf6N2E2_4721 0.70 +0.2
5,460,384 - Pf6N2E2_4721 0.70 +0.9
5,460,384 - Pf6N2E2_4721 0.70 -0.2
5,460,384 - Pf6N2E2_4721 0.70 +0.6
5,460,384 - Pf6N2E2_4721 0.70 +1.9
5,460,384 - Pf6N2E2_4721 0.70 +0.6
5,460,582 + +0.9
5,460,583 - +1.6
5,460,613 + +0.5
5,460,674 + +0.3
5,460,675 - +0.6
5,460,728 - +0.2
5,460,728 - -0.5
5,460,772 + +0.5
5,460,850 - +0.0
5,460,892 + Pf6N2E2_4722 0.12 +0.6
5,461,026 + Pf6N2E2_4722 0.27 +1.3
5,461,213 + Pf6N2E2_4722 0.49 -0.3
5,461,214 - Pf6N2E2_4722 0.49 +1.3
5,461,214 - Pf6N2E2_4722 0.49 +0.4
5,461,214 - Pf6N2E2_4722 0.49 +0.1
5,461,214 - Pf6N2E2_4722 0.49 -0.3
5,461,312 + Pf6N2E2_4722 0.60 +0.4
5,461,423 + Pf6N2E2_4722 0.73 -0.3
5,461,423 + Pf6N2E2_4722 0.73 +0.2
5,461,423 + Pf6N2E2_4722 0.73 -0.9
5,461,462 + Pf6N2E2_4722 0.78 +0.3
5,461,462 + Pf6N2E2_4722 0.78 +0.3
5,461,462 + Pf6N2E2_4722 0.78 +0.0
5,461,462 + Pf6N2E2_4722 0.78 +0.3
5,461,462 + Pf6N2E2_4722 0.78 +0.2
5,461,462 + Pf6N2E2_4722 0.78 -2.4
5,461,463 - Pf6N2E2_4722 0.78 -0.6
5,461,463 - Pf6N2E2_4722 0.78 +0.2
5,461,463 - Pf6N2E2_4722 0.78 -0.1
5,461,531 + Pf6N2E2_4722 0.86 +1.2

Or see this region's nucleotide sequence