Experiment: L-Lysine 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4700 and Pf6N2E2_4701 are separated by 80 nucleotides Pf6N2E2_4701 and Pf6N2E2_4702 are separated by 15 nucleotides Pf6N2E2_4702 and Pf6N2E2_4703 are separated by 66 nucleotides Pf6N2E2_4703 and Pf6N2E2_4704 are separated by 27 nucleotides
Pf6N2E2_4700 - Microsomal dipeptidase (EC 3.4.13.19), at 5,432,268 to 5,433,245
_4700
Pf6N2E2_4701 - FIG00953113: hypothetical protein, at 5,433,326 to 5,433,856
_4701
Pf6N2E2_4702 - DgcA Dimethylglycine demethylase subunit A, at 5,433,872 to 5,435,932
_4702
Pf6N2E2_4703 - hypothetical protein, at 5,435,999 to 5,436,112
_4703
Pf6N2E2_4704 - Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) , at 5,436,140 to 5,438,089
_4704
Position (kb)
5433
5434
5435
5436 Strain fitness (log2 ratio)
-2
-1
0
1 at 5432.968 kb on - strand, within Pf6N2E2_4700 at 5433.070 kb on - strand, within Pf6N2E2_4700 at 5433.270 kb on + strand at 5433.298 kb on + strand at 5433.352 kb on + strand at 5433.407 kb on + strand, within Pf6N2E2_4701 at 5433.407 kb on + strand, within Pf6N2E2_4701 at 5433.407 kb on + strand, within Pf6N2E2_4701 at 5433.408 kb on - strand, within Pf6N2E2_4701 at 5433.473 kb on + strand, within Pf6N2E2_4701 at 5433.489 kb on - strand, within Pf6N2E2_4701 at 5433.489 kb on - strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.577 kb on + strand, within Pf6N2E2_4701 at 5433.577 kb on + strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.680 kb on + strand, within Pf6N2E2_4701 at 5433.680 kb on + strand, within Pf6N2E2_4701 at 5433.680 kb on + strand, within Pf6N2E2_4701 at 5433.681 kb on - strand, within Pf6N2E2_4701 at 5433.681 kb on - strand, within Pf6N2E2_4701 at 5433.681 kb on - strand, within Pf6N2E2_4701 at 5433.687 kb on - strand, within Pf6N2E2_4701 at 5433.687 kb on - strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.714 kb on - strand, within Pf6N2E2_4701 at 5433.714 kb on - strand, within Pf6N2E2_4701 at 5433.800 kb on + strand, within Pf6N2E2_4701 at 5433.800 kb on + strand, within Pf6N2E2_4701 at 5433.854 kb on + strand at 5433.854 kb on + strand at 5433.959 kb on + strand at 5433.959 kb on + strand at 5433.959 kb on + strand at 5433.960 kb on - strand at 5434.001 kb on + strand at 5434.001 kb on + strand at 5434.002 kb on - strand at 5434.002 kb on - strand at 5434.325 kb on + strand, within Pf6N2E2_4702 at 5434.325 kb on + strand, within Pf6N2E2_4702 at 5434.325 kb on + strand, within Pf6N2E2_4702 at 5434.326 kb on - strand, within Pf6N2E2_4702 at 5434.326 kb on - strand, within Pf6N2E2_4702 at 5434.326 kb on - strand, within Pf6N2E2_4702 at 5434.326 kb on - strand, within Pf6N2E2_4702 at 5434.326 kb on - strand, within Pf6N2E2_4702 at 5434.604 kb on + strand, within Pf6N2E2_4702 at 5434.604 kb on + strand, within Pf6N2E2_4702 at 5434.604 kb on + strand, within Pf6N2E2_4702 at 5434.604 kb on + strand, within Pf6N2E2_4702 at 5434.605 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.700 kb on + strand, within Pf6N2E2_4702 at 5434.701 kb on - strand, within Pf6N2E2_4702 at 5434.820 kb on + strand, within Pf6N2E2_4702 at 5434.821 kb on - strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.929 kb on - strand, within Pf6N2E2_4702 at 5434.929 kb on - strand, within Pf6N2E2_4702 at 5434.929 kb on - strand, within Pf6N2E2_4702 at 5434.929 kb on - strand, within Pf6N2E2_4702 at 5434.929 kb on - strand, within Pf6N2E2_4702 at 5434.947 kb on - strand, within Pf6N2E2_4702 at 5434.947 kb on - strand, within Pf6N2E2_4702 at 5434.997 kb on + strand, within Pf6N2E2_4702 at 5434.997 kb on + strand, within Pf6N2E2_4702 at 5434.997 kb on + strand, within Pf6N2E2_4702 at 5434.998 kb on - strand, within Pf6N2E2_4702 at 5434.998 kb on - strand, within Pf6N2E2_4702 at 5435.201 kb on - strand, within Pf6N2E2_4702 at 5435.290 kb on - strand, within Pf6N2E2_4702 at 5435.290 kb on - strand, within Pf6N2E2_4702 at 5435.432 kb on + strand, within Pf6N2E2_4702 at 5435.432 kb on + strand, within Pf6N2E2_4702 at 5435.561 kb on + strand, within Pf6N2E2_4702 at 5435.561 kb on + strand, within Pf6N2E2_4702 at 5435.561 kb on + strand, within Pf6N2E2_4702 at 5435.561 kb on + strand, within Pf6N2E2_4702 at 5435.561 kb on + strand, within Pf6N2E2_4702 at 5435.562 kb on - strand, within Pf6N2E2_4702 at 5435.562 kb on - strand, within Pf6N2E2_4702 at 5435.576 kb on + strand, within Pf6N2E2_4702 at 5435.576 kb on + strand, within Pf6N2E2_4702 at 5435.577 kb on - strand, within Pf6N2E2_4702 at 5435.577 kb on - strand, within Pf6N2E2_4702 at 5435.624 kb on + strand, within Pf6N2E2_4702 at 5435.625 kb on - strand, within Pf6N2E2_4702 at 5435.625 kb on - strand, within Pf6N2E2_4702 at 5435.666 kb on + strand, within Pf6N2E2_4702 at 5435.666 kb on + strand, within Pf6N2E2_4702 at 5435.666 kb on + strand, within Pf6N2E2_4702 at 5435.666 kb on + strand, within Pf6N2E2_4702 at 5435.742 kb on - strand at 5435.744 kb on + strand at 5435.745 kb on - strand at 5435.881 kb on + strand at 5435.881 kb on + strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.884 kb on + strand at 5435.885 kb on - strand at 5435.900 kb on + strand at 5435.901 kb on - strand at 5435.901 kb on - strand at 5435.947 kb on + strand at 5435.947 kb on + strand at 5435.948 kb on - strand at 5435.948 kb on - strand at 5435.948 kb on - strand at 5435.948 kb on - strand at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.084 kb on - strand, within Pf6N2E2_4703 at 5436.084 kb on - strand, within Pf6N2E2_4703 at 5436.084 kb on - strand, within Pf6N2E2_4703 at 5436.084 kb on - strand, within Pf6N2E2_4703 at 5436.084 kb on - strand, within Pf6N2E2_4703 at 5436.139 kb on + strand at 5436.139 kb on + strand at 5436.139 kb on + strand at 5436.139 kb on + strand at 5436.140 kb on - strand at 5436.140 kb on - strand at 5436.140 kb on - strand at 5436.140 kb on - strand at 5436.140 kb on - strand at 5436.140 kb on - strand at 5436.161 kb on - strand at 5436.217 kb on + strand at 5436.217 kb on + strand at 5436.217 kb on + strand at 5436.217 kb on + strand at 5436.217 kb on + strand at 5436.217 kb on + strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.285 kb on - strand at 5436.323 kb on + strand at 5436.323 kb on + strand at 5436.323 kb on + strand at 5436.323 kb on + strand at 5436.323 kb on + strand at 5436.323 kb on + strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.476 kb on + strand, within Pf6N2E2_4704 at 5436.477 kb on - strand, within Pf6N2E2_4704 at 5436.477 kb on - strand, within Pf6N2E2_4704
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 25 mM remove 5,432,968 - Pf6N2E2_4700 0.72 -2.1 5,433,070 - Pf6N2E2_4700 0.82 -0.7 5,433,270 + -1.1 5,433,298 + +0.9 5,433,352 + -0.4 5,433,407 + Pf6N2E2_4701 0.15 -0.1 5,433,407 + Pf6N2E2_4701 0.15 -0.6 5,433,407 + Pf6N2E2_4701 0.15 +0.1 5,433,408 - Pf6N2E2_4701 0.15 -0.5 5,433,473 + Pf6N2E2_4701 0.28 -0.4 5,433,489 - Pf6N2E2_4701 0.31 +0.6 5,433,489 - Pf6N2E2_4701 0.31 +0.3 5,433,575 + Pf6N2E2_4701 0.47 +0.5 5,433,575 + Pf6N2E2_4701 0.47 -2.6 5,433,575 + Pf6N2E2_4701 0.47 -0.1 5,433,575 + Pf6N2E2_4701 0.47 -0.1 5,433,575 + Pf6N2E2_4701 0.47 +0.2 5,433,575 + Pf6N2E2_4701 0.47 -1.6 5,433,576 - Pf6N2E2_4701 0.47 +1.0 5,433,576 - Pf6N2E2_4701 0.47 +0.3 5,433,576 - Pf6N2E2_4701 0.47 +0.3 5,433,576 - Pf6N2E2_4701 0.47 -1.1 5,433,577 + Pf6N2E2_4701 0.47 -0.6 5,433,577 + Pf6N2E2_4701 0.47 -0.3 5,433,578 - Pf6N2E2_4701 0.47 +0.4 5,433,578 - Pf6N2E2_4701 0.47 +0.3 5,433,578 - Pf6N2E2_4701 0.47 -0.6 5,433,578 - Pf6N2E2_4701 0.47 -0.0 5,433,578 - Pf6N2E2_4701 0.47 -1.3 5,433,578 - Pf6N2E2_4701 0.47 -0.3 5,433,578 - Pf6N2E2_4701 0.47 -1.4 5,433,680 + Pf6N2E2_4701 0.67 -0.1 5,433,680 + Pf6N2E2_4701 0.67 +0.3 5,433,680 + Pf6N2E2_4701 0.67 +0.1 5,433,681 - Pf6N2E2_4701 0.67 +0.7 5,433,681 - Pf6N2E2_4701 0.67 +0.1 5,433,681 - Pf6N2E2_4701 0.67 +0.3 5,433,687 - Pf6N2E2_4701 0.68 +0.6 5,433,687 - Pf6N2E2_4701 0.68 -0.2 5,433,713 + Pf6N2E2_4701 0.73 -0.3 5,433,713 + Pf6N2E2_4701 0.73 +0.3 5,433,713 + Pf6N2E2_4701 0.73 -0.4 5,433,713 + Pf6N2E2_4701 0.73 -0.0 5,433,713 + Pf6N2E2_4701 0.73 -1.2 5,433,714 - Pf6N2E2_4701 0.73 +0.4 5,433,714 - Pf6N2E2_4701 0.73 -1.2 5,433,800 + Pf6N2E2_4701 0.89 +0.4 5,433,800 + Pf6N2E2_4701 0.89 -0.2 5,433,854 + +1.7 5,433,854 + +0.1 5,433,959 + -0.9 5,433,959 + -0.7 5,433,959 + -0.3 5,433,960 - +0.2 5,434,001 + -1.4 5,434,001 + +0.1 5,434,002 - +0.5 5,434,002 - +0.3 5,434,325 + Pf6N2E2_4702 0.22 -0.3 5,434,325 + Pf6N2E2_4702 0.22 +0.8 5,434,325 + Pf6N2E2_4702 0.22 -0.2 5,434,326 - Pf6N2E2_4702 0.22 -0.1 5,434,326 - Pf6N2E2_4702 0.22 -0.8 5,434,326 - Pf6N2E2_4702 0.22 -0.9 5,434,326 - Pf6N2E2_4702 0.22 +0.6 5,434,326 - Pf6N2E2_4702 0.22 -0.3 5,434,604 + Pf6N2E2_4702 0.36 -0.7 5,434,604 + Pf6N2E2_4702 0.36 -0.3 5,434,604 + Pf6N2E2_4702 0.36 -0.0 5,434,604 + Pf6N2E2_4702 0.36 +1.5 5,434,605 - Pf6N2E2_4702 0.36 +0.1 5,434,608 - Pf6N2E2_4702 0.36 -0.0 5,434,608 - Pf6N2E2_4702 0.36 +0.5 5,434,608 - Pf6N2E2_4702 0.36 -0.2 5,434,608 - Pf6N2E2_4702 0.36 +0.3 5,434,608 - Pf6N2E2_4702 0.36 +0.2 5,434,608 - Pf6N2E2_4702 0.36 -0.7 5,434,700 + Pf6N2E2_4702 0.40 -1.2 5,434,701 - Pf6N2E2_4702 0.40 +0.6 5,434,820 + Pf6N2E2_4702 0.46 -0.4 5,434,821 - Pf6N2E2_4702 0.46 +0.3 5,434,928 + Pf6N2E2_4702 0.51 +0.4 5,434,928 + Pf6N2E2_4702 0.51 -0.3 5,434,928 + Pf6N2E2_4702 0.51 +0.9 5,434,928 + Pf6N2E2_4702 0.51 +0.1 5,434,928 + Pf6N2E2_4702 0.51 +0.2 5,434,928 + Pf6N2E2_4702 0.51 +0.5 5,434,928 + Pf6N2E2_4702 0.51 +0.2 5,434,928 + Pf6N2E2_4702 0.51 +1.0 5,434,928 + Pf6N2E2_4702 0.51 +0.4 5,434,928 + Pf6N2E2_4702 0.51 +0.5 5,434,929 - Pf6N2E2_4702 0.51 +0.3 5,434,929 - Pf6N2E2_4702 0.51 -1.5 5,434,929 - Pf6N2E2_4702 0.51 -0.5 5,434,929 - Pf6N2E2_4702 0.51 +0.3 5,434,929 - Pf6N2E2_4702 0.51 +0.2 5,434,947 - Pf6N2E2_4702 0.52 -0.1 5,434,947 - Pf6N2E2_4702 0.52 +0.4 5,434,997 + Pf6N2E2_4702 0.55 +0.7 5,434,997 + Pf6N2E2_4702 0.55 -0.4 5,434,997 + Pf6N2E2_4702 0.55 +0.1 5,434,998 - Pf6N2E2_4702 0.55 -0.6 5,434,998 - Pf6N2E2_4702 0.55 -0.4 5,435,201 - Pf6N2E2_4702 0.64 +0.4 5,435,290 - Pf6N2E2_4702 0.69 -0.3 5,435,290 - Pf6N2E2_4702 0.69 -0.8 5,435,432 + Pf6N2E2_4702 0.76 -0.3 5,435,432 + Pf6N2E2_4702 0.76 +0.2 5,435,561 + Pf6N2E2_4702 0.82 -0.2 5,435,561 + Pf6N2E2_4702 0.82 +0.2 5,435,561 + Pf6N2E2_4702 0.82 +0.2 5,435,561 + Pf6N2E2_4702 0.82 -0.9 5,435,561 + Pf6N2E2_4702 0.82 -0.2 5,435,562 - Pf6N2E2_4702 0.82 -0.9 5,435,562 - Pf6N2E2_4702 0.82 +0.9 5,435,576 + Pf6N2E2_4702 0.83 +0.5 5,435,576 + Pf6N2E2_4702 0.83 -0.1 5,435,577 - Pf6N2E2_4702 0.83 +0.3 5,435,577 - Pf6N2E2_4702 0.83 +0.2 5,435,624 + Pf6N2E2_4702 0.85 +1.1 5,435,625 - Pf6N2E2_4702 0.85 +0.4 5,435,625 - Pf6N2E2_4702 0.85 +0.5 5,435,666 + Pf6N2E2_4702 0.87 -0.3 5,435,666 + Pf6N2E2_4702 0.87 -0.3 5,435,666 + Pf6N2E2_4702 0.87 +0.0 5,435,666 + Pf6N2E2_4702 0.87 -0.3 5,435,742 - +1.1 5,435,744 + -0.3 5,435,745 - -0.4 5,435,881 + +0.1 5,435,881 + -0.1 5,435,882 - -1.9 5,435,882 - +1.0 5,435,882 - -0.7 5,435,882 - +1.1 5,435,882 - +0.8 5,435,882 - +0.4 5,435,882 - -0.2 5,435,884 + -0.0 5,435,885 - +0.2 5,435,900 + -0.4 5,435,901 - +0.2 5,435,901 - +0.1 5,435,947 + +0.8 5,435,947 + +0.0 5,435,948 - -0.4 5,435,948 - +0.3 5,435,948 - +0.3 5,435,948 - +0.4 5,436,083 + Pf6N2E2_4703 0.74 -1.1 5,436,083 + Pf6N2E2_4703 0.74 +0.5 5,436,083 + Pf6N2E2_4703 0.74 +0.3 5,436,083 + Pf6N2E2_4703 0.74 -0.0 5,436,083 + Pf6N2E2_4703 0.74 +1.3 5,436,083 + Pf6N2E2_4703 0.74 -0.2 5,436,083 + Pf6N2E2_4703 0.74 -1.2 5,436,084 - Pf6N2E2_4703 0.75 -0.1 5,436,084 - Pf6N2E2_4703 0.75 -0.9 5,436,084 - Pf6N2E2_4703 0.75 +0.0 5,436,084 - Pf6N2E2_4703 0.75 +0.1 5,436,084 - Pf6N2E2_4703 0.75 -0.5 5,436,139 + -0.6 5,436,139 + +0.4 5,436,139 + -1.7 5,436,139 + +1.0 5,436,140 - -0.1 5,436,140 - -0.2 5,436,140 - +1.4 5,436,140 - -0.3 5,436,140 - +0.0 5,436,140 - +0.5 5,436,161 - -0.5 5,436,217 + +0.5 5,436,217 + -0.3 5,436,217 + -0.7 5,436,217 + +0.5 5,436,217 + +0.3 5,436,217 + +0.8 5,436,218 - -0.4 5,436,218 - +0.4 5,436,218 - +1.2 5,436,218 - +1.6 5,436,218 - +0.7 5,436,218 - -0.1 5,436,218 - -1.1 5,436,218 - +0.7 5,436,218 - +1.1 5,436,284 + +0.2 5,436,284 + +0.1 5,436,284 + +0.1 5,436,284 + -0.4 5,436,284 + -0.5 5,436,284 + +0.8 5,436,284 + -0.4 5,436,285 - +0.2 5,436,323 + +0.2 5,436,323 + -0.4 5,436,323 + +0.1 5,436,323 + +0.4 5,436,323 + +0.6 5,436,323 + -0.1 5,436,324 - -0.0 5,436,324 - +0.7 5,436,324 - +0.1 5,436,324 - -0.6 5,436,324 - -0.8 5,436,324 - +0.1 5,436,324 - +0.3 5,436,476 + Pf6N2E2_4704 0.17 -0.0 5,436,477 - Pf6N2E2_4704 0.17 +0.6 5,436,477 - Pf6N2E2_4704 0.17 -1.0
Or see this region's nucleotide sequence