Experiment: L-Lysine 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1812 and Pf6N2E2_1813 overlap by 4 nucleotides Pf6N2E2_1813 and Pf6N2E2_1814 overlap by 4 nucleotides Pf6N2E2_1814 and Pf6N2E2_1815 overlap by 4 nucleotides
Pf6N2E2_1812 - peptide ABC transporter, ATP-binding protein, at 2,144,208 to 2,145,224
_1812
Pf6N2E2_1813 - ABC-type oligopeptide transport system, ATPase component, at 2,145,221 to 2,146,210
_1813
Pf6N2E2_1814 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 2,146,207 to 2,147,631
_1814
Pf6N2E2_1815 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 2,147,628 to 2,148,782
_1815
Position (kb)
2146
2147
2148 Strain fitness (log2 ratio)
-1
0
1 at 2145.403 kb on - strand, within Pf6N2E2_1813 at 2145.518 kb on + strand, within Pf6N2E2_1813 at 2145.518 kb on + strand, within Pf6N2E2_1813 at 2145.836 kb on + strand, within Pf6N2E2_1813 at 2145.837 kb on - strand, within Pf6N2E2_1813 at 2145.837 kb on - strand, within Pf6N2E2_1813 at 2145.837 kb on - strand, within Pf6N2E2_1813 at 2145.837 kb on - strand, within Pf6N2E2_1813 at 2145.841 kb on - strand, within Pf6N2E2_1813 at 2145.900 kb on - strand, within Pf6N2E2_1813 at 2145.940 kb on - strand, within Pf6N2E2_1813 at 2145.962 kb on + strand, within Pf6N2E2_1813 at 2145.963 kb on - strand, within Pf6N2E2_1813 at 2146.478 kb on - strand, within Pf6N2E2_1814 at 2146.478 kb on - strand, within Pf6N2E2_1814 at 2146.737 kb on + strand, within Pf6N2E2_1814 at 2146.738 kb on - strand, within Pf6N2E2_1814 at 2146.738 kb on - strand, within Pf6N2E2_1814 at 2147.222 kb on - strand, within Pf6N2E2_1814 at 2147.222 kb on - strand, within Pf6N2E2_1814 at 2147.222 kb on - strand, within Pf6N2E2_1814 at 2147.727 kb on + strand at 2147.728 kb on - strand at 2147.728 kb on - strand at 2147.872 kb on + strand, within Pf6N2E2_1815 at 2147.928 kb on + strand, within Pf6N2E2_1815 at 2148.313 kb on - strand, within Pf6N2E2_1815 at 2148.403 kb on + strand, within Pf6N2E2_1815 at 2148.403 kb on + strand, within Pf6N2E2_1815 at 2148.404 kb on - strand, within Pf6N2E2_1815
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 25 mM remove 2,145,403 - Pf6N2E2_1813 0.18 +0.3 2,145,518 + Pf6N2E2_1813 0.30 -0.0 2,145,518 + Pf6N2E2_1813 0.30 +0.4 2,145,836 + Pf6N2E2_1813 0.62 +1.0 2,145,837 - Pf6N2E2_1813 0.62 +0.3 2,145,837 - Pf6N2E2_1813 0.62 +0.1 2,145,837 - Pf6N2E2_1813 0.62 +0.2 2,145,837 - Pf6N2E2_1813 0.62 -0.1 2,145,841 - Pf6N2E2_1813 0.63 -0.1 2,145,900 - Pf6N2E2_1813 0.69 -0.1 2,145,940 - Pf6N2E2_1813 0.73 +0.2 2,145,962 + Pf6N2E2_1813 0.75 +0.2 2,145,963 - Pf6N2E2_1813 0.75 +0.7 2,146,478 - Pf6N2E2_1814 0.19 +0.4 2,146,478 - Pf6N2E2_1814 0.19 +0.6 2,146,737 + Pf6N2E2_1814 0.37 +0.3 2,146,738 - Pf6N2E2_1814 0.37 +0.3 2,146,738 - Pf6N2E2_1814 0.37 +1.2 2,147,222 - Pf6N2E2_1814 0.71 -0.5 2,147,222 - Pf6N2E2_1814 0.71 +1.5 2,147,222 - Pf6N2E2_1814 0.71 +0.5 2,147,727 + -0.1 2,147,728 - -0.6 2,147,728 - +0.2 2,147,872 + Pf6N2E2_1815 0.21 -0.8 2,147,928 + Pf6N2E2_1815 0.26 +0.1 2,148,313 - Pf6N2E2_1815 0.59 -0.1 2,148,403 + Pf6N2E2_1815 0.67 -0.7 2,148,403 + Pf6N2E2_1815 0.67 +0.4 2,148,404 - Pf6N2E2_1815 0.67 -0.2
Or see this region's nucleotide sequence