Experiment: PYE with Cobalt chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00304 and CCNA_00305 overlap by 31 nucleotides CCNA_00305 and CCNA_00306 are separated by 31 nucleotides CCNA_00306 and CCNA_00307 overlap by 4 nucleotides
CCNA_00304: CCNA_00304 - 3-deoxy-D-manno-octulosonic-acid transferase, at 318,031 to 319,308
_00304
CCNA_00305: CCNA_00305 - cobalt-zinc-cadmium resistance protein czcD, at 319,278 to 320,303
_00305
CCNA_00306: CCNA_00306 - lysophospholipid acyltransferase, at 320,335 to 321,048
_00306
CCNA_00307: CCNA_00307 - phospholipid-lipopolysaccharide ABC transporter, at 321,045 to 322,868
_00307
Position (kb) 319
320
321 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 319.310 kb on + strand at 319.368 kb on + strand at 319.381 kb on - strand, within CCNA_00305 at 319.450 kb on - strand, within CCNA_00305 at 319.465 kb on + strand, within CCNA_00305 at 319.473 kb on - strand, within CCNA_00305 at 319.473 kb on - strand, within CCNA_00305 at 319.473 kb on - strand, within CCNA_00305 at 319.565 kb on - strand, within CCNA_00305 at 319.597 kb on - strand, within CCNA_00305 at 319.617 kb on + strand, within CCNA_00305 at 319.666 kb on + strand, within CCNA_00305 at 319.671 kb on + strand, within CCNA_00305 at 319.671 kb on + strand, within CCNA_00305 at 319.674 kb on - strand, within CCNA_00305 at 319.674 kb on - strand, within CCNA_00305 at 319.722 kb on + strand, within CCNA_00305 at 319.722 kb on + strand, within CCNA_00305 at 319.743 kb on - strand, within CCNA_00305 at 319.754 kb on + strand, within CCNA_00305 at 319.773 kb on + strand, within CCNA_00305 at 319.841 kb on - strand, within CCNA_00305 at 319.843 kb on + strand, within CCNA_00305 at 319.912 kb on + strand, within CCNA_00305 at 319.939 kb on + strand, within CCNA_00305 at 319.939 kb on - strand, within CCNA_00305 at 319.944 kb on + strand, within CCNA_00305 at 319.947 kb on - strand, within CCNA_00305 at 319.949 kb on + strand, within CCNA_00305 at 319.949 kb on + strand, within CCNA_00305 at 319.949 kb on + strand, within CCNA_00305 at 319.949 kb on + strand, within CCNA_00305 at 319.949 kb on + strand, within CCNA_00305 at 319.951 kb on + strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.957 kb on - strand, within CCNA_00305 at 319.959 kb on - strand, within CCNA_00305 at 320.024 kb on - strand, within CCNA_00305 at 320.034 kb on - strand, within CCNA_00305 at 320.042 kb on - strand, within CCNA_00305 at 320.044 kb on + strand, within CCNA_00305 at 320.059 kb on + strand, within CCNA_00305 at 320.120 kb on - strand, within CCNA_00305 at 320.178 kb on - strand, within CCNA_00305 at 320.331 kb on - strand at 320.331 kb on - strand at 320.340 kb on - strand at 320.346 kb on - strand at 321.002 kb on + strand at 321.062 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Cobalt chloride 0.04 mM remove 319,310 + -1.7 319,368 + -1.4 319,381 - CCNA_00305 0.10 -2.0 319,450 - CCNA_00305 0.17 -1.8 319,465 + CCNA_00305 0.18 -0.6 319,473 - CCNA_00305 0.19 -3.1 319,473 - CCNA_00305 0.19 -3.7 319,473 - CCNA_00305 0.19 -3.2 319,565 - CCNA_00305 0.28 -2.7 319,597 - CCNA_00305 0.31 -2.2 319,617 + CCNA_00305 0.33 -1.2 319,666 + CCNA_00305 0.38 -1.5 319,671 + CCNA_00305 0.38 -0.7 319,671 + CCNA_00305 0.38 -2.9 319,674 - CCNA_00305 0.39 -4.4 319,674 - CCNA_00305 0.39 -2.4 319,722 + CCNA_00305 0.43 -2.1 319,722 + CCNA_00305 0.43 -2.9 319,743 - CCNA_00305 0.45 -2.5 319,754 + CCNA_00305 0.46 +0.0 319,773 + CCNA_00305 0.48 -1.9 319,841 - CCNA_00305 0.55 -3.5 319,843 + CCNA_00305 0.55 -2.1 319,912 + CCNA_00305 0.62 -2.8 319,939 + CCNA_00305 0.64 -1.1 319,939 - CCNA_00305 0.64 -3.2 319,944 + CCNA_00305 0.65 -1.0 319,947 - CCNA_00305 0.65 -1.6 319,949 + CCNA_00305 0.65 -2.0 319,949 + CCNA_00305 0.65 -3.5 319,949 + CCNA_00305 0.65 -4.3 319,949 + CCNA_00305 0.65 -3.9 319,949 + CCNA_00305 0.65 -3.2 319,951 + CCNA_00305 0.66 +0.3 319,957 - CCNA_00305 0.66 -4.1 319,957 - CCNA_00305 0.66 -2.2 319,957 - CCNA_00305 0.66 -3.0 319,957 - CCNA_00305 0.66 -1.8 319,957 - CCNA_00305 0.66 -2.3 319,957 - CCNA_00305 0.66 -2.1 319,957 - CCNA_00305 0.66 -2.2 319,957 - CCNA_00305 0.66 -2.9 319,957 - CCNA_00305 0.66 -3.6 319,957 - CCNA_00305 0.66 -3.0 319,957 - CCNA_00305 0.66 -2.7 319,957 - CCNA_00305 0.66 -1.6 319,957 - CCNA_00305 0.66 -2.4 319,959 - CCNA_00305 0.66 -1.6 320,024 - CCNA_00305 0.73 -2.1 320,034 - CCNA_00305 0.74 -3.5 320,042 - CCNA_00305 0.74 -2.5 320,044 + CCNA_00305 0.75 -1.9 320,059 + CCNA_00305 0.76 -0.2 320,120 - CCNA_00305 0.82 -2.0 320,178 - CCNA_00305 0.88 -3.4 320,331 - +0.6 320,331 - +3.5 320,340 - +2.8 320,346 - +3.3 321,002 + -0.4 321,062 - +1.3
Or see this region's nucleotide sequence