Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3279

Experiment: Thallium(I) acetate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3277 and Ac3H11_3278 are separated by 83 nucleotidesAc3H11_3278 and Ac3H11_3279 are separated by 111 nucleotidesAc3H11_3279 and Ac3H11_3280 are separated by 123 nucleotidesAc3H11_3280 and Ac3H11_3281 are separated by 51 nucleotides Ac3H11_3277 - LysR family transcriptional regulator PA2758, at 9,146 to 10,087 _3277 Ac3H11_3278 - hypothetical protein, at 10,171 to 10,974 _3278 Ac3H11_3279 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 11,086 to 12,066 _3279 Ac3H11_3280 - Gfa-like protein, at 12,190 to 12,594 _3280 Ac3H11_3281 - UDP-galactose-lipid carrier transferase (EC 2.-.-.-), at 12,646 to 13,491 _3281 Position (kb) 11 12 13Strain fitness (log2 ratio) -1 0 1 2at 10.103 kb on - strandat 10.149 kb on + strandat 10.484 kb on + strand, within Ac3H11_3278at 10.484 kb on + strand, within Ac3H11_3278at 10.484 kb on + strand, within Ac3H11_3278at 10.484 kb on + strand, within Ac3H11_3278at 10.485 kb on - strand, within Ac3H11_3278at 10.517 kb on + strand, within Ac3H11_3278at 10.518 kb on - strand, within Ac3H11_3278at 10.659 kb on - strand, within Ac3H11_3278at 10.659 kb on - strand, within Ac3H11_3278at 10.659 kb on - strand, within Ac3H11_3278at 11.083 kb on - strandat 11.132 kb on - strandat 12.046 kb on + strandat 12.271 kb on + strand, within Ac3H11_3280at 12.271 kb on + strand, within Ac3H11_3280at 12.272 kb on - strand, within Ac3H11_3280at 12.272 kb on - strand, within Ac3H11_3280at 12.272 kb on - strand, within Ac3H11_3280at 12.373 kb on + strand, within Ac3H11_3280at 12.373 kb on + strand, within Ac3H11_3280at 12.373 kb on + strand, within Ac3H11_3280at 12.374 kb on - strand, within Ac3H11_3280at 12.374 kb on - strand, within Ac3H11_3280at 12.374 kb on - strand, within Ac3H11_3280at 12.403 kb on + strand, within Ac3H11_3280at 12.403 kb on + strand, within Ac3H11_3280at 12.403 kb on + strand, within Ac3H11_3280at 12.403 kb on + strand, within Ac3H11_3280at 12.403 kb on + strand, within Ac3H11_3280at 12.403 kb on + strand, within Ac3H11_3280at 12.404 kb on - strand, within Ac3H11_3280at 12.469 kb on + strand, within Ac3H11_3280at 12.469 kb on + strand, within Ac3H11_3280at 12.469 kb on + strand, within Ac3H11_3280at 12.469 kb on + strand, within Ac3H11_3280at 12.469 kb on + strand, within Ac3H11_3280at 12.469 kb on + strand, within Ac3H11_3280at 12.469 kb on + strand, within Ac3H11_3280at 12.469 kb on + strand, within Ac3H11_3280at 12.469 kb on + strand, within Ac3H11_3280at 12.469 kb on + strand, within Ac3H11_3280at 12.469 kb on + strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.470 kb on - strand, within Ac3H11_3280at 12.482 kb on + strand, within Ac3H11_3280at 12.482 kb on + strand, within Ac3H11_3280at 12.482 kb on + strand, within Ac3H11_3280at 12.482 kb on + strand, within Ac3H11_3280at 12.482 kb on + strand, within Ac3H11_3280at 12.482 kb on + strand, within Ac3H11_3280at 12.482 kb on + strand, within Ac3H11_3280at 12.482 kb on + strand, within Ac3H11_3280at 12.482 kb on + strand, within Ac3H11_3280at 12.483 kb on - strand, within Ac3H11_3280at 12.483 kb on - strand, within Ac3H11_3280at 12.483 kb on - strand, within Ac3H11_3280at 12.586 kb on + strandat 12.586 kb on + strandat 12.587 kb on - strandat 12.587 kb on - strandat 12.609 kb on + strandat 12.838 kb on + strand, within Ac3H11_3281at 12.838 kb on + strand, within Ac3H11_3281at 12.838 kb on + strand, within Ac3H11_3281at 12.839 kb on - strand, within Ac3H11_3281at 12.839 kb on - strand, within Ac3H11_3281at 12.839 kb on - strand, within Ac3H11_3281at 12.839 kb on - strand, within Ac3H11_3281at 12.839 kb on - strand, within Ac3H11_3281at 12.853 kb on + strand, within Ac3H11_3281at 12.854 kb on - strand, within Ac3H11_3281at 12.854 kb on - strand, within Ac3H11_3281at 12.854 kb on - strand, within Ac3H11_3281at 12.854 kb on - strand, within Ac3H11_3281at 12.854 kb on - strand, within Ac3H11_3281at 12.885 kb on + strand, within Ac3H11_3281at 12.885 kb on + strand, within Ac3H11_3281at 12.885 kb on + strand, within Ac3H11_3281at 12.886 kb on - strandat 12.886 kb on - strand, within Ac3H11_3281at 12.994 kb on + strand, within Ac3H11_3281at 12.994 kb on + strand, within Ac3H11_3281at 12.994 kb on + strand, within Ac3H11_3281at 12.994 kb on + strand, within Ac3H11_3281at 12.994 kb on + strand, within Ac3H11_3281at 12.995 kb on - strand, within Ac3H11_3281at 12.995 kb on - strand, within Ac3H11_3281at 12.995 kb on - strand, within Ac3H11_3281at 12.995 kb on - strand, within Ac3H11_3281at 13.060 kb on + strand, within Ac3H11_3281at 13.060 kb on + strand, within Ac3H11_3281at 13.060 kb on + strand, within Ac3H11_3281at 13.060 kb on + strand, within Ac3H11_3281at 13.060 kb on + strand, within Ac3H11_3281at 13.060 kb on + strand, within Ac3H11_3281at 13.060 kb on + strand, within Ac3H11_3281at 13.060 kb on + strand, within Ac3H11_3281at 13.060 kb on + strand, within Ac3H11_3281at 13.060 kb on + strand, within Ac3H11_3281at 13.061 kb on - strand, within Ac3H11_3281at 13.061 kb on - strand, within Ac3H11_3281

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0006 mg/ml
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10,103 - +0.4
10,149 + +1.1
10,484 + Ac3H11_3278 0.39 +0.9
10,484 + Ac3H11_3278 0.39 +0.6
10,484 + Ac3H11_3278 0.39 +0.1
10,484 + Ac3H11_3278 0.39 +0.7
10,485 - Ac3H11_3278 0.39 +1.0
10,517 + Ac3H11_3278 0.43 +0.7
10,518 - Ac3H11_3278 0.43 -0.5
10,659 - Ac3H11_3278 0.61 +0.9
10,659 - Ac3H11_3278 0.61 +0.3
10,659 - Ac3H11_3278 0.61 +1.2
11,083 - +0.1
11,132 - -0.0
12,046 + +0.1
12,271 + Ac3H11_3280 0.20 -0.6
12,271 + Ac3H11_3280 0.20 +0.5
12,272 - Ac3H11_3280 0.20 +0.9
12,272 - Ac3H11_3280 0.20 -0.1
12,272 - Ac3H11_3280 0.20 +0.6
12,373 + Ac3H11_3280 0.45 -0.8
12,373 + Ac3H11_3280 0.45 -0.9
12,373 + Ac3H11_3280 0.45 +1.1
12,374 - Ac3H11_3280 0.45 -1.0
12,374 - Ac3H11_3280 0.45 +0.1
12,374 - Ac3H11_3280 0.45 +0.7
12,403 + Ac3H11_3280 0.53 +0.7
12,403 + Ac3H11_3280 0.53 -0.4
12,403 + Ac3H11_3280 0.53 -0.3
12,403 + Ac3H11_3280 0.53 -0.1
12,403 + Ac3H11_3280 0.53 -0.0
12,403 + Ac3H11_3280 0.53 +0.2
12,404 - Ac3H11_3280 0.53 +0.3
12,469 + Ac3H11_3280 0.69 -0.8
12,469 + Ac3H11_3280 0.69 -0.7
12,469 + Ac3H11_3280 0.69 -0.6
12,469 + Ac3H11_3280 0.69 -0.2
12,469 + Ac3H11_3280 0.69 -0.0
12,469 + Ac3H11_3280 0.69 -1.5
12,469 + Ac3H11_3280 0.69 +0.4
12,469 + Ac3H11_3280 0.69 +0.3
12,469 + Ac3H11_3280 0.69 +1.0
12,469 + Ac3H11_3280 0.69 -0.3
12,469 + Ac3H11_3280 0.69 -1.2
12,470 - Ac3H11_3280 0.69 +0.1
12,470 - Ac3H11_3280 0.69 +0.7
12,470 - Ac3H11_3280 0.69 +0.1
12,470 - Ac3H11_3280 0.69 -0.8
12,470 - Ac3H11_3280 0.69 +0.0
12,470 - Ac3H11_3280 0.69 +0.3
12,470 - Ac3H11_3280 0.69 +0.9
12,470 - Ac3H11_3280 0.69 +0.2
12,470 - Ac3H11_3280 0.69 -0.6
12,470 - Ac3H11_3280 0.69 +0.2
12,470 - Ac3H11_3280 0.69 -0.3
12,470 - Ac3H11_3280 0.69 -0.5
12,470 - Ac3H11_3280 0.69 +0.9
12,470 - Ac3H11_3280 0.69 +0.4
12,470 - Ac3H11_3280 0.69 +0.8
12,482 + Ac3H11_3280 0.72 +1.0
12,482 + Ac3H11_3280 0.72 -0.4
12,482 + Ac3H11_3280 0.72 -1.1
12,482 + Ac3H11_3280 0.72 -0.3
12,482 + Ac3H11_3280 0.72 +0.8
12,482 + Ac3H11_3280 0.72 -0.3
12,482 + Ac3H11_3280 0.72 -0.1
12,482 + Ac3H11_3280 0.72 -0.7
12,482 + Ac3H11_3280 0.72 +0.7
12,483 - Ac3H11_3280 0.72 +0.4
12,483 - Ac3H11_3280 0.72 -0.5
12,483 - Ac3H11_3280 0.72 +0.8
12,586 + -0.2
12,586 + -1.0
12,587 - +1.4
12,587 - -0.0
12,609 + +1.0
12,838 + Ac3H11_3281 0.23 -0.0
12,838 + Ac3H11_3281 0.23 -0.2
12,838 + Ac3H11_3281 0.23 +0.6
12,839 - Ac3H11_3281 0.23 -0.0
12,839 - Ac3H11_3281 0.23 -0.7
12,839 - Ac3H11_3281 0.23 -0.2
12,839 - Ac3H11_3281 0.23 +0.4
12,839 - Ac3H11_3281 0.23 -0.2
12,853 + Ac3H11_3281 0.24 -0.1
12,854 - Ac3H11_3281 0.25 -0.2
12,854 - Ac3H11_3281 0.25 -0.1
12,854 - Ac3H11_3281 0.25 +0.8
12,854 - Ac3H11_3281 0.25 -0.1
12,854 - Ac3H11_3281 0.25 +0.5
12,885 + Ac3H11_3281 0.28 -0.5
12,885 + Ac3H11_3281 0.28 -0.4
12,885 + Ac3H11_3281 0.28 -1.0
12,886 - +1.0
12,886 - Ac3H11_3281 0.28 -0.7
12,994 + Ac3H11_3281 0.41 -0.1
12,994 + Ac3H11_3281 0.41 +1.0
12,994 + Ac3H11_3281 0.41 +0.3
12,994 + Ac3H11_3281 0.41 +0.8
12,994 + Ac3H11_3281 0.41 -0.4
12,995 - Ac3H11_3281 0.41 +0.7
12,995 - Ac3H11_3281 0.41 +0.4
12,995 - Ac3H11_3281 0.41 -0.4
12,995 - Ac3H11_3281 0.41 -0.0
13,060 + Ac3H11_3281 0.49 +1.0
13,060 + Ac3H11_3281 0.49 +0.7
13,060 + Ac3H11_3281 0.49 +0.2
13,060 + Ac3H11_3281 0.49 +0.6
13,060 + Ac3H11_3281 0.49 +0.7
13,060 + Ac3H11_3281 0.49 +1.8
13,060 + Ac3H11_3281 0.49 +0.1
13,060 + Ac3H11_3281 0.49 -0.3
13,060 + Ac3H11_3281 0.49 -0.7
13,060 + Ac3H11_3281 0.49 -0.6
13,061 - Ac3H11_3281 0.49 +0.2
13,061 - Ac3H11_3281 0.49 +1.0

Or see this region's nucleotide sequence