Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_153

Experiment: Thallium(I) acetate 0.0006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_151 and Ac3H11_152 are separated by 36 nucleotidesAc3H11_152 and Ac3H11_153 are separated by 106 nucleotidesAc3H11_153 and Ac3H11_154 are separated by 106 nucleotides Ac3H11_151 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 35,127 to 36,611 _151 Ac3H11_152 - hypothetical protein, at 36,648 to 36,797 _152 Ac3H11_153 - Similar to 5-oxoprolinase (EC 3.5.2.9) and Methylhydantoinases A, B (EC 3.5.2.14), contradiction in experimental data (see Annotation), at 36,904 to 40,548 _153 Ac3H11_154 - TRAP transporter solute receptor, unknown substrate 5, at 40,655 to 41,620 _154 Position (kb) 36 37 38 39 40 41Strain fitness (log2 ratio) -2 -1 0 1at 36.205 kb on + strand, within Ac3H11_151at 36.444 kb on + strand, within Ac3H11_151at 36.444 kb on + strand, within Ac3H11_151at 36.650 kb on - strandat 36.780 kb on - strand, within Ac3H11_152at 36.791 kb on - strandat 37.199 kb on + strandat 37.368 kb on - strand, within Ac3H11_153at 37.604 kb on + strand, within Ac3H11_153at 37.604 kb on + strand, within Ac3H11_153at 37.605 kb on - strand, within Ac3H11_153at 37.605 kb on - strand, within Ac3H11_153at 37.605 kb on - strand, within Ac3H11_153at 37.605 kb on - strand, within Ac3H11_153at 37.829 kb on + strand, within Ac3H11_153at 37.830 kb on - strand, within Ac3H11_153at 37.830 kb on - strand, within Ac3H11_153at 37.830 kb on - strand, within Ac3H11_153at 37.830 kb on - strand, within Ac3H11_153at 37.830 kb on - strand, within Ac3H11_153at 38.136 kb on - strand, within Ac3H11_153at 38.136 kb on - strand, within Ac3H11_153at 38.165 kb on + strand, within Ac3H11_153at 38.231 kb on + strand, within Ac3H11_153at 38.232 kb on - strand, within Ac3H11_153at 38.232 kb on - strand, within Ac3H11_153at 38.232 kb on - strand, within Ac3H11_153at 38.232 kb on - strand, within Ac3H11_153at 38.400 kb on - strand, within Ac3H11_153at 38.501 kb on + strand, within Ac3H11_153at 38.691 kb on - strand, within Ac3H11_153at 38.919 kb on - strand, within Ac3H11_153at 38.919 kb on - strand, within Ac3H11_153at 39.105 kb on - strand, within Ac3H11_153at 39.414 kb on - strand, within Ac3H11_153at 39.414 kb on - strand, within Ac3H11_153at 39.480 kb on - strand, within Ac3H11_153at 39.480 kb on - strand, within Ac3H11_153at 39.542 kb on + strand, within Ac3H11_153at 39.894 kb on - strand, within Ac3H11_153at 39.894 kb on - strand, within Ac3H11_153at 39.894 kb on - strand, within Ac3H11_153at 40.173 kb on - strand, within Ac3H11_153at 40.192 kb on + strandat 40.193 kb on - strandat 40.193 kb on - strandat 40.193 kb on - strandat 40.193 kb on - strandat 40.193 kb on - strandat 40.573 kb on - strandat 40.573 kb on - strandat 40.656 kb on + strandat 40.656 kb on + strandat 40.656 kb on + strandat 40.668 kb on + strandat 40.669 kb on - strandat 40.968 kb on + strand, within Ac3H11_154at 40.969 kb on - strand, within Ac3H11_154at 40.969 kb on - strand, within Ac3H11_154at 41.133 kb on + strand, within Ac3H11_154at 41.133 kb on + strand, within Ac3H11_154at 41.134 kb on - strand, within Ac3H11_154at 41.220 kb on + strand, within Ac3H11_154at 41.220 kb on + strand, within Ac3H11_154at 41.221 kb on - strand, within Ac3H11_154

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.0006 mg/ml
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36,205 + Ac3H11_151 0.73 +0.7
36,444 + Ac3H11_151 0.89 +1.3
36,444 + Ac3H11_151 0.89 -0.2
36,650 - -0.6
36,780 - Ac3H11_152 0.88 -0.9
36,791 - +0.8
37,199 + -1.9
37,368 - Ac3H11_153 0.13 -0.2
37,604 + Ac3H11_153 0.19 +0.7
37,604 + Ac3H11_153 0.19 +1.1
37,605 - Ac3H11_153 0.19 -0.7
37,605 - Ac3H11_153 0.19 -0.2
37,605 - Ac3H11_153 0.19 +0.1
37,605 - Ac3H11_153 0.19 -1.1
37,829 + Ac3H11_153 0.25 +0.0
37,830 - Ac3H11_153 0.25 -0.0
37,830 - Ac3H11_153 0.25 -0.2
37,830 - Ac3H11_153 0.25 -1.0
37,830 - Ac3H11_153 0.25 -0.2
37,830 - Ac3H11_153 0.25 -1.5
38,136 - Ac3H11_153 0.34 -0.7
38,136 - Ac3H11_153 0.34 -0.5
38,165 + Ac3H11_153 0.35 +0.2
38,231 + Ac3H11_153 0.36 +0.1
38,232 - Ac3H11_153 0.36 -0.6
38,232 - Ac3H11_153 0.36 +0.3
38,232 - Ac3H11_153 0.36 +0.2
38,232 - Ac3H11_153 0.36 +0.0
38,400 - Ac3H11_153 0.41 -1.7
38,501 + Ac3H11_153 0.44 +0.0
38,691 - Ac3H11_153 0.49 -0.0
38,919 - Ac3H11_153 0.55 -0.6
38,919 - Ac3H11_153 0.55 +0.5
39,105 - Ac3H11_153 0.60 -0.1
39,414 - Ac3H11_153 0.69 +0.2
39,414 - Ac3H11_153 0.69 +0.3
39,480 - Ac3H11_153 0.71 +0.5
39,480 - Ac3H11_153 0.71 -0.3
39,542 + Ac3H11_153 0.72 +0.5
39,894 - Ac3H11_153 0.82 -0.2
39,894 - Ac3H11_153 0.82 +0.0
39,894 - Ac3H11_153 0.82 +0.4
40,173 - Ac3H11_153 0.90 -0.4
40,192 + +1.3
40,193 - +0.2
40,193 - +0.1
40,193 - -0.1
40,193 - -0.7
40,193 - +0.2
40,573 - -1.3
40,573 - +0.9
40,656 + -0.7
40,656 + +0.5
40,656 + +0.3
40,668 + -0.6
40,669 - +0.7
40,968 + Ac3H11_154 0.32 -0.5
40,969 - Ac3H11_154 0.33 -0.7
40,969 - Ac3H11_154 0.33 -1.0
41,133 + Ac3H11_154 0.49 +0.2
41,133 + Ac3H11_154 0.49 +0.5
41,134 - Ac3H11_154 0.50 -0.2
41,220 + Ac3H11_154 0.58 +0.4
41,220 + Ac3H11_154 0.58 +0.3
41,221 - Ac3H11_154 0.59 +0.7

Or see this region's nucleotide sequence