Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25050

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25045 and AZOBR_RS25050 are separated by 91 nucleotidesAZOBR_RS25050 and AZOBR_RS25055 are separated by 29 nucleotidesAZOBR_RS25055 and AZOBR_RS25060 overlap by 4 nucleotides AZOBR_RS25045: AZOBR_RS25045 - hypothetical protein, at 676,890 to 678,887 _RS25045 AZOBR_RS25050: AZOBR_RS25050 - hypothetical protein, at 678,979 to 679,239 _RS25050 AZOBR_RS25055: AZOBR_RS25055 - hypothetical protein, at 679,269 to 679,622 _RS25055 AZOBR_RS25060: AZOBR_RS25060 - hypothetical protein, at 679,619 to 681,577 _RS25060 Position (kb) 678 679 680Strain fitness (log2 ratio) -2 -1 0 1 2at 678.004 kb on - strand, within AZOBR_RS25045at 678.004 kb on - strand, within AZOBR_RS25045at 678.032 kb on + strand, within AZOBR_RS25045at 678.060 kb on - strand, within AZOBR_RS25045at 678.184 kb on - strand, within AZOBR_RS25045at 678.210 kb on + strand, within AZOBR_RS25045at 678.210 kb on + strand, within AZOBR_RS25045at 678.211 kb on - strand, within AZOBR_RS25045at 678.211 kb on - strand, within AZOBR_RS25045at 678.252 kb on + strand, within AZOBR_RS25045at 678.252 kb on + strand, within AZOBR_RS25045at 678.252 kb on + strand, within AZOBR_RS25045at 678.253 kb on - strand, within AZOBR_RS25045at 678.267 kb on - strand, within AZOBR_RS25045at 678.295 kb on + strand, within AZOBR_RS25045at 678.295 kb on + strand, within AZOBR_RS25045at 678.295 kb on + strand, within AZOBR_RS25045at 678.295 kb on + strand, within AZOBR_RS25045at 678.296 kb on - strand, within AZOBR_RS25045at 678.296 kb on - strand, within AZOBR_RS25045at 678.301 kb on - strand, within AZOBR_RS25045at 678.368 kb on + strand, within AZOBR_RS25045at 678.368 kb on + strand, within AZOBR_RS25045at 678.368 kb on + strand, within AZOBR_RS25045at 678.368 kb on + strand, within AZOBR_RS25045at 678.369 kb on - strand, within AZOBR_RS25045at 678.369 kb on - strand, within AZOBR_RS25045at 678.415 kb on - strand, within AZOBR_RS25045at 678.415 kb on - strand, within AZOBR_RS25045at 678.592 kb on + strand, within AZOBR_RS25045at 678.650 kb on + strand, within AZOBR_RS25045at 678.650 kb on + strand, within AZOBR_RS25045at 678.650 kb on + strand, within AZOBR_RS25045at 678.650 kb on + strand, within AZOBR_RS25045at 678.650 kb on + strand, within AZOBR_RS25045at 678.650 kb on + strand, within AZOBR_RS25045at 678.650 kb on + strand, within AZOBR_RS25045at 678.650 kb on + strand, within AZOBR_RS25045at 678.651 kb on - strand, within AZOBR_RS25045at 678.651 kb on - strand, within AZOBR_RS25045at 678.651 kb on - strand, within AZOBR_RS25045at 678.651 kb on - strand, within AZOBR_RS25045at 678.651 kb on - strand, within AZOBR_RS25045at 678.651 kb on - strand, within AZOBR_RS25045at 678.651 kb on - strand, within AZOBR_RS25045at 678.651 kb on - strand, within AZOBR_RS25045at 678.651 kb on - strand, within AZOBR_RS25045at 678.672 kb on + strand, within AZOBR_RS25045at 678.672 kb on + strand, within AZOBR_RS25045at 678.673 kb on - strand, within AZOBR_RS25045at 678.673 kb on - strand, within AZOBR_RS25045at 678.726 kb on + strandat 678.790 kb on + strandat 678.814 kb on - strandat 678.814 kb on - strandat 678.834 kb on + strandat 678.835 kb on - strandat 678.835 kb on - strandat 678.849 kb on + strandat 678.850 kb on - strandat 678.885 kb on + strandat 678.886 kb on - strandat 678.886 kb on - strandat 678.886 kb on - strandat 678.932 kb on - strandat 678.932 kb on - strandat 678.947 kb on - strandat 678.962 kb on + strandat 678.962 kb on + strandat 678.962 kb on + strandat 678.962 kb on + strandat 678.962 kb on + strandat 678.963 kb on - strandat 678.963 kb on - strandat 678.963 kb on - strandat 678.963 kb on - strandat 678.963 kb on - strandat 678.965 kb on + strandat 679.042 kb on + strand, within AZOBR_RS25050at 679.057 kb on + strand, within AZOBR_RS25050at 679.058 kb on - strand, within AZOBR_RS25050at 679.058 kb on - strand, within AZOBR_RS25050at 679.204 kb on + strand, within AZOBR_RS25050at 679.214 kb on + strandat 679.237 kb on + strandat 679.238 kb on - strandat 679.241 kb on + strandat 679.293 kb on + strandat 679.293 kb on + strandat 679.294 kb on - strandat 679.294 kb on - strandat 679.294 kb on - strandat 679.294 kb on - strandat 679.294 kb on - strandat 679.530 kb on + strand, within AZOBR_RS25055at 679.530 kb on + strand, within AZOBR_RS25055at 679.530 kb on + strand, within AZOBR_RS25055at 679.530 kb on + strand, within AZOBR_RS25055at 679.530 kb on + strand, within AZOBR_RS25055at 679.536 kb on + strand, within AZOBR_RS25055at 679.536 kb on + strand, within AZOBR_RS25055at 679.537 kb on - strand, within AZOBR_RS25055at 679.595 kb on + strandat 679.595 kb on + strandat 679.743 kb on - strandat 679.788 kb on - strandat 679.788 kb on - strandat 679.802 kb on + strandat 679.803 kb on - strandat 679.803 kb on - strandat 679.856 kb on + strand, within AZOBR_RS25060at 679.856 kb on + strand, within AZOBR_RS25060at 679.911 kb on - strand, within AZOBR_RS25060at 679.911 kb on - strand, within AZOBR_RS25060at 679.964 kb on + strand, within AZOBR_RS25060at 679.964 kb on + strand, within AZOBR_RS25060at 679.965 kb on - strand, within AZOBR_RS25060at 679.965 kb on - strand, within AZOBR_RS25060at 679.965 kb on - strand, within AZOBR_RS25060at 679.965 kb on - strand, within AZOBR_RS25060at 679.965 kb on - strand, within AZOBR_RS25060at 679.965 kb on - strand, within AZOBR_RS25060at 679.997 kb on - strand, within AZOBR_RS25060at 680.090 kb on + strand, within AZOBR_RS25060at 680.090 kb on + strand, within AZOBR_RS25060at 680.090 kb on + strand, within AZOBR_RS25060at 680.090 kb on + strand, within AZOBR_RS25060at 680.090 kb on + strand, within AZOBR_RS25060at 680.091 kb on - strand, within AZOBR_RS25060at 680.091 kb on - strand, within AZOBR_RS25060at 680.091 kb on - strand, within AZOBR_RS25060at 680.091 kb on - strand, within AZOBR_RS25060at 680.091 kb on - strand, within AZOBR_RS25060at 680.120 kb on + strand, within AZOBR_RS25060

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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678,004 - AZOBR_RS25045 0.56 -0.4
678,004 - AZOBR_RS25045 0.56 -0.8
678,032 + AZOBR_RS25045 0.57 -1.2
678,060 - AZOBR_RS25045 0.59 -1.4
678,184 - AZOBR_RS25045 0.65 -0.2
678,210 + AZOBR_RS25045 0.66 -0.2
678,210 + AZOBR_RS25045 0.66 +2.1
678,211 - AZOBR_RS25045 0.66 +0.3
678,211 - AZOBR_RS25045 0.66 +0.1
678,252 + AZOBR_RS25045 0.68 +0.1
678,252 + AZOBR_RS25045 0.68 +0.3
678,252 + AZOBR_RS25045 0.68 +0.9
678,253 - AZOBR_RS25045 0.68 +0.3
678,267 - AZOBR_RS25045 0.69 +0.5
678,295 + AZOBR_RS25045 0.70 -0.1
678,295 + AZOBR_RS25045 0.70 -0.2
678,295 + AZOBR_RS25045 0.70 -0.2
678,295 + AZOBR_RS25045 0.70 -0.3
678,296 - AZOBR_RS25045 0.70 +0.5
678,296 - AZOBR_RS25045 0.70 +0.9
678,301 - AZOBR_RS25045 0.71 +0.4
678,368 + AZOBR_RS25045 0.74 -0.7
678,368 + AZOBR_RS25045 0.74 -0.7
678,368 + AZOBR_RS25045 0.74 +0.1
678,368 + AZOBR_RS25045 0.74 +0.1
678,369 - AZOBR_RS25045 0.74 +1.5
678,369 - AZOBR_RS25045 0.74 +0.0
678,415 - AZOBR_RS25045 0.76 -0.9
678,415 - AZOBR_RS25045 0.76 -0.4
678,592 + AZOBR_RS25045 0.85 +1.1
678,650 + AZOBR_RS25045 0.88 +0.3
678,650 + AZOBR_RS25045 0.88 +0.0
678,650 + AZOBR_RS25045 0.88 +0.5
678,650 + AZOBR_RS25045 0.88 +0.0
678,650 + AZOBR_RS25045 0.88 +0.5
678,650 + AZOBR_RS25045 0.88 +0.1
678,650 + AZOBR_RS25045 0.88 +0.2
678,650 + AZOBR_RS25045 0.88 -0.6
678,651 - AZOBR_RS25045 0.88 +0.0
678,651 - AZOBR_RS25045 0.88 -0.5
678,651 - AZOBR_RS25045 0.88 +0.1
678,651 - AZOBR_RS25045 0.88 +0.0
678,651 - AZOBR_RS25045 0.88 -0.5
678,651 - AZOBR_RS25045 0.88 -1.3
678,651 - AZOBR_RS25045 0.88 +0.0
678,651 - AZOBR_RS25045 0.88 +0.0
678,651 - AZOBR_RS25045 0.88 -0.2
678,672 + AZOBR_RS25045 0.89 -0.7
678,672 + AZOBR_RS25045 0.89 -0.7
678,673 - AZOBR_RS25045 0.89 -0.3
678,673 - AZOBR_RS25045 0.89 -0.3
678,726 + -0.5
678,790 + -0.5
678,814 - -1.1
678,814 - -0.3
678,834 + -0.7
678,835 - -0.1
678,835 - -0.3
678,849 + +0.1
678,850 - -0.2
678,885 + +0.9
678,886 - +0.3
678,886 - -0.5
678,886 - -0.7
678,932 - -0.2
678,932 - +0.1
678,947 - -0.1
678,962 + +0.1
678,962 + -0.2
678,962 + -0.3
678,962 + -0.3
678,962 + +0.1
678,963 - +1.1
678,963 - -0.6
678,963 - +0.7
678,963 - -0.6
678,963 - -0.4
678,965 + -0.3
679,042 + AZOBR_RS25050 0.24 -0.2
679,057 + AZOBR_RS25050 0.30 -0.2
679,058 - AZOBR_RS25050 0.30 -2.6
679,058 - AZOBR_RS25050 0.30 -1.9
679,204 + AZOBR_RS25050 0.86 -0.6
679,214 + -0.9
679,237 + -0.1
679,238 - -0.1
679,241 + +0.1
679,293 + +1.5
679,293 + -0.1
679,294 - -0.5
679,294 - +1.2
679,294 - +0.8
679,294 - +0.2
679,294 - +0.4
679,530 + AZOBR_RS25055 0.74 -0.5
679,530 + AZOBR_RS25055 0.74 -0.0
679,530 + AZOBR_RS25055 0.74 +0.4
679,530 + AZOBR_RS25055 0.74 +0.5
679,530 + AZOBR_RS25055 0.74 +0.1
679,536 + AZOBR_RS25055 0.75 -1.0
679,536 + AZOBR_RS25055 0.75 -0.6
679,537 - AZOBR_RS25055 0.76 -0.2
679,595 + +0.0
679,595 + -1.9
679,743 - -0.6
679,788 - -0.6
679,788 - -0.9
679,802 + +0.0
679,803 - +0.1
679,803 - +0.0
679,856 + AZOBR_RS25060 0.12 +0.4
679,856 + AZOBR_RS25060 0.12 -0.4
679,911 - AZOBR_RS25060 0.15 +0.1
679,911 - AZOBR_RS25060 0.15 -1.2
679,964 + AZOBR_RS25060 0.18 -0.3
679,964 + AZOBR_RS25060 0.18 +0.2
679,965 - AZOBR_RS25060 0.18 +0.3
679,965 - AZOBR_RS25060 0.18 -1.5
679,965 - AZOBR_RS25060 0.18 +0.0
679,965 - AZOBR_RS25060 0.18 +0.5
679,965 - AZOBR_RS25060 0.18 -1.1
679,965 - AZOBR_RS25060 0.18 -0.4
679,997 - AZOBR_RS25060 0.19 -1.5
680,090 + AZOBR_RS25060 0.24 -0.3
680,090 + AZOBR_RS25060 0.24 -0.2
680,090 + AZOBR_RS25060 0.24 -0.4
680,090 + AZOBR_RS25060 0.24 +0.1
680,090 + AZOBR_RS25060 0.24 -0.1
680,091 - AZOBR_RS25060 0.24 -0.1
680,091 - AZOBR_RS25060 0.24 +0.7
680,091 - AZOBR_RS25060 0.24 -1.3
680,091 - AZOBR_RS25060 0.24 -0.8
680,091 - AZOBR_RS25060 0.24 +0.0
680,120 + AZOBR_RS25060 0.26 +0.3

Or see this region's nucleotide sequence