Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24470 and AZOBR_RS24475 are separated by 3 nucleotides AZOBR_RS24475 and AZOBR_RS24480 are separated by 34 nucleotides AZOBR_RS24480 and AZOBR_RS24485 are separated by 5 nucleotides
AZOBR_RS24470: AZOBR_RS24470 - hypothetical protein, at 551,415 to 552,446
_RS24470
AZOBR_RS24475: AZOBR_RS24475 - hypothetical protein, at 552,450 to 553,451
_RS24475
AZOBR_RS24480: AZOBR_RS24480 - putative histidine biosynthesis protein, at 553,486 to 554,193
_RS24480
AZOBR_RS24485: AZOBR_RS24485 - aldehyde-activating protein, at 554,199 to 554,720
_RS24485
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 551.750 kb on + strand, within AZOBR_RS24470 at 551.879 kb on - strand, within AZOBR_RS24470 at 552.076 kb on + strand, within AZOBR_RS24470 at 552.077 kb on - strand, within AZOBR_RS24470 at 552.823 kb on - strand, within AZOBR_RS24475 at 552.823 kb on - strand, within AZOBR_RS24475 at 553.257 kb on + strand, within AZOBR_RS24475 at 553.257 kb on + strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.651 kb on + strand, within AZOBR_RS24480 at 554.191 kb on + strand at 554.191 kb on + strand at 554.303 kb on - strand, within AZOBR_RS24485 at 554.303 kb on - strand, within AZOBR_RS24485 at 554.308 kb on + strand, within AZOBR_RS24485 at 554.308 kb on + strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 551,750 + AZOBR_RS24470 0.32 -0.1 551,879 - AZOBR_RS24470 0.45 +0.5 552,076 + AZOBR_RS24470 0.64 -0.3 552,077 - AZOBR_RS24470 0.64 -0.1 552,823 - AZOBR_RS24475 0.37 +0.3 552,823 - AZOBR_RS24475 0.37 -0.4 553,257 + AZOBR_RS24475 0.81 +0.2 553,257 + AZOBR_RS24475 0.81 +0.3 553,258 - AZOBR_RS24475 0.81 -0.2 553,258 - AZOBR_RS24475 0.81 -0.1 553,258 - AZOBR_RS24475 0.81 +1.2 553,258 - AZOBR_RS24475 0.81 -0.1 553,651 + AZOBR_RS24480 0.23 -0.6 554,191 + -0.4 554,191 + +0.7 554,303 - AZOBR_RS24485 0.20 -1.1 554,303 - AZOBR_RS24485 0.20 +0.3 554,308 + AZOBR_RS24485 0.21 -0.1 554,308 + AZOBR_RS24485 0.21 -3.1 554,309 - AZOBR_RS24485 0.21 +0.7 554,309 - AZOBR_RS24485 0.21 +0.2 554,309 - AZOBR_RS24485 0.21 -0.5 554,309 - AZOBR_RS24485 0.21 -1.1 554,309 - AZOBR_RS24485 0.21 -0.1
Or see this region's nucleotide sequence