Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03910 and AZOBR_RS03915 are separated by 18 nucleotides AZOBR_RS03915 and AZOBR_RS03920 are separated by 33 nucleotides AZOBR_RS03920 and AZOBR_RS03925 are separated by 177 nucleotides
AZOBR_RS03910: AZOBR_RS03910 - membrane protein, at 826,119 to 826,679
_RS03910
AZOBR_RS03915: AZOBR_RS03915 - trans-aconitate 2-methyltransferase, at 826,698 to 827,462
_RS03915
AZOBR_RS03920: AZOBR_RS03920 - conserved exported protein of unknown function, at 827,496 to 827,705
_RS03920
AZOBR_RS03925: AZOBR_RS03925 - histidine kinase, at 827,883 to 829,265
_RS03925
Position (kb) 827
828 Strain fitness (log2 ratio) -1
0
1
2 at 826.677 kb on + strand at 826.677 kb on + strand at 826.699 kb on + strand at 826.790 kb on - strand, within AZOBR_RS03915 at 826.904 kb on - strand, within AZOBR_RS03915 at 826.954 kb on + strand, within AZOBR_RS03915 at 826.955 kb on - strand, within AZOBR_RS03915 at 826.955 kb on - strand, within AZOBR_RS03915 at 826.957 kb on + strand, within AZOBR_RS03915 at 826.958 kb on - strand, within AZOBR_RS03915 at 826.958 kb on - strand, within AZOBR_RS03915 at 826.958 kb on - strand, within AZOBR_RS03915 at 827.039 kb on - strand, within AZOBR_RS03915 at 827.394 kb on + strand at 827.395 kb on - strand at 827.440 kb on + strand at 827.441 kb on - strand at 827.441 kb on - strand at 827.542 kb on + strand, within AZOBR_RS03920 at 827.543 kb on - strand, within AZOBR_RS03920 at 827.606 kb on - strand at 827.608 kb on + strand, within AZOBR_RS03920 at 827.609 kb on - strand, within AZOBR_RS03920 at 827.609 kb on - strand, within AZOBR_RS03920 at 828.352 kb on + strand, within AZOBR_RS03925 at 828.352 kb on + strand, within AZOBR_RS03925 at 828.352 kb on + strand, within AZOBR_RS03925 at 828.352 kb on + strand, within AZOBR_RS03925 at 828.353 kb on - strand, within AZOBR_RS03925 at 828.353 kb on - strand, within AZOBR_RS03925
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 826,677 + -0.0 826,677 + -0.5 826,699 + +0.3 826,790 - AZOBR_RS03915 0.12 -0.2 826,904 - AZOBR_RS03915 0.27 +0.4 826,954 + AZOBR_RS03915 0.33 +0.9 826,955 - AZOBR_RS03915 0.34 -0.3 826,955 - AZOBR_RS03915 0.34 -0.2 826,957 + AZOBR_RS03915 0.34 -0.2 826,958 - AZOBR_RS03915 0.34 -0.2 826,958 - AZOBR_RS03915 0.34 +0.1 826,958 - AZOBR_RS03915 0.34 +1.5 827,039 - AZOBR_RS03915 0.45 +1.8 827,394 + +0.2 827,395 - -1.7 827,440 + +0.2 827,441 - -0.3 827,441 - -0.1 827,542 + AZOBR_RS03920 0.22 +0.2 827,543 - AZOBR_RS03920 0.22 +0.3 827,606 - +2.2 827,608 + AZOBR_RS03920 0.53 +0.1 827,609 - AZOBR_RS03920 0.54 -0.3 827,609 - AZOBR_RS03920 0.54 -0.3 828,352 + AZOBR_RS03925 0.34 -0.0 828,352 + AZOBR_RS03925 0.34 +0.8 828,352 + AZOBR_RS03925 0.34 -0.8 828,352 + AZOBR_RS03925 0.34 -0.2 828,353 - AZOBR_RS03925 0.34 -0.4 828,353 - AZOBR_RS03925 0.34 -0.7
Or see this region's nucleotide sequence