Experiment: Tetracycline 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26935 and AO353_26940 are separated by 132 nucleotides AO353_26940 and AO353_26945 are separated by 246 nucleotides AO353_26945 and AO353_26950 are separated by 197 nucleotides
AO353_26935: AO353_26935 - LysR family transcriptional regulator, at 5,906,461 to 5,907,333
_26935
AO353_26940: AO353_26940 - diguanylate phosphodiesterase, at 5,907,466 to 5,909,001
_26940
AO353_26945: AO353_26945 - transcriptional regulator, at 5,909,248 to 5,909,610
_26945
AO353_26950: AO353_26950 - hypothetical protein, at 5,909,808 to 5,910,344
_26950
Position (kb) 5907
5908
5909
5910 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5906.801 kb on - strand, within AO353_26935 at 5906.813 kb on - strand, within AO353_26935 at 5906.970 kb on + strand, within AO353_26935 at 5907.225 kb on + strand, within AO353_26935 at 5907.225 kb on + strand, within AO353_26935 at 5907.300 kb on + strand at 5907.301 kb on - strand at 5907.314 kb on + strand at 5907.314 kb on + strand at 5907.314 kb on + strand at 5907.350 kb on - strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.358 kb on + strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.359 kb on - strand at 5907.425 kb on - strand at 5907.425 kb on - strand at 5907.442 kb on - strand at 5907.542 kb on + strand at 5907.542 kb on + strand at 5907.542 kb on + strand at 5907.542 kb on + strand at 5907.542 kb on + strand at 5907.542 kb on + strand at 5907.543 kb on - strand at 5907.543 kb on - strand at 5907.545 kb on + strand at 5907.545 kb on + strand at 5907.546 kb on - strand at 5907.546 kb on - strand at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.782 kb on + strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand at 5907.783 kb on - strand, within AO353_26940 at 5907.783 kb on - strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.784 kb on + strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.785 kb on - strand, within AO353_26940 at 5907.797 kb on + strand, within AO353_26940 at 5907.797 kb on + strand, within AO353_26940 at 5907.797 kb on + strand, within AO353_26940 at 5907.797 kb on + strand, within AO353_26940 at 5907.798 kb on - strand, within AO353_26940 at 5907.798 kb on - strand, within AO353_26940 at 5907.808 kb on + strand, within AO353_26940 at 5907.809 kb on - strand, within AO353_26940 at 5907.809 kb on - strand, within AO353_26940 at 5907.836 kb on - strand, within AO353_26940 at 5907.901 kb on + strand, within AO353_26940 at 5907.901 kb on + strand, within AO353_26940 at 5907.992 kb on + strand, within AO353_26940 at 5907.992 kb on + strand, within AO353_26940 at 5907.992 kb on + strand, within AO353_26940 at 5907.992 kb on + strand, within AO353_26940 at 5907.993 kb on - strand, within AO353_26940 at 5907.998 kb on + strand, within AO353_26940 at 5907.999 kb on - strand, within AO353_26940 at 5907.999 kb on - strand, within AO353_26940 at 5908.022 kb on + strand, within AO353_26940 at 5908.023 kb on - strand, within AO353_26940 at 5908.023 kb on - strand, within AO353_26940 at 5908.026 kb on + strand, within AO353_26940 at 5908.026 kb on + strand, within AO353_26940 at 5908.062 kb on - strand, within AO353_26940 at 5908.100 kb on - strand, within AO353_26940 at 5908.112 kb on + strand, within AO353_26940 at 5908.112 kb on + strand, within AO353_26940 at 5908.112 kb on + strand, within AO353_26940 at 5908.147 kb on + strand, within AO353_26940 at 5908.147 kb on + strand, within AO353_26940 at 5908.148 kb on - strand, within AO353_26940 at 5908.226 kb on + strand, within AO353_26940 at 5908.294 kb on + strand, within AO353_26940 at 5908.294 kb on + strand, within AO353_26940 at 5908.294 kb on + strand, within AO353_26940 at 5908.295 kb on - strand, within AO353_26940 at 5908.295 kb on - strand, within AO353_26940 at 5908.295 kb on - strand, within AO353_26940 at 5908.295 kb on - strand, within AO353_26940 at 5908.295 kb on - strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.676 kb on + strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.677 kb on - strand, within AO353_26940 at 5908.728 kb on + strand, within AO353_26940 at 5908.729 kb on - strand, within AO353_26940 at 5908.738 kb on + strand, within AO353_26940 at 5908.738 kb on + strand, within AO353_26940 at 5908.772 kb on + strand, within AO353_26940 at 5908.772 kb on + strand, within AO353_26940 at 5908.773 kb on - strand, within AO353_26940 at 5908.906 kb on + strand at 5908.906 kb on + strand at 5908.906 kb on + strand at 5908.907 kb on - strand at 5908.943 kb on - strand at 5908.946 kb on + strand at 5908.946 kb on + strand at 5908.947 kb on - strand at 5908.999 kb on + strand at 5909.000 kb on - strand at 5909.000 kb on - strand at 5909.000 kb on - strand at 5909.003 kb on + strand at 5909.003 kb on + strand at 5909.081 kb on - strand at 5909.121 kb on + strand at 5909.121 kb on + strand at 5909.122 kb on - strand at 5909.124 kb on + strand at 5909.179 kb on + strand at 5909.180 kb on - strand at 5909.180 kb on - strand at 5909.195 kb on + strand at 5909.195 kb on + strand at 5909.195 kb on + strand at 5909.196 kb on - strand at 5909.197 kb on + strand at 5909.198 kb on - strand at 5909.198 kb on - strand at 5909.233 kb on - strand at 5909.241 kb on - strand at 5909.246 kb on + strand at 5909.246 kb on + strand at 5909.246 kb on + strand at 5909.247 kb on - strand at 5909.386 kb on + strand, within AO353_26945 at 5909.387 kb on - strand, within AO353_26945 at 5909.494 kb on + strand, within AO353_26945 at 5909.572 kb on + strand, within AO353_26945 at 5909.572 kb on + strand, within AO353_26945 at 5909.573 kb on - strand, within AO353_26945 at 5909.608 kb on + strand at 5909.608 kb on + strand at 5909.608 kb on + strand at 5909.609 kb on - strand at 5909.609 kb on - strand at 5909.657 kb on - strand at 5909.657 kb on - strand at 5909.666 kb on + strand at 5909.667 kb on - strand at 5909.667 kb on - strand at 5909.667 kb on - strand at 5909.667 kb on - strand at 5909.669 kb on - strand at 5909.669 kb on - strand at 5909.669 kb on - strand at 5909.669 kb on - strand at 5909.672 kb on + strand at 5909.672 kb on + strand at 5909.673 kb on - strand at 5909.673 kb on - strand at 5909.716 kb on + strand at 5909.717 kb on - strand at 5909.746 kb on + strand at 5909.747 kb on - strand at 5909.806 kb on + strand at 5909.806 kb on + strand at 5909.807 kb on - strand at 5909.807 kb on - strand at 5909.809 kb on + strand at 5909.810 kb on - strand at 5909.810 kb on - strand at 5909.810 kb on - strand at 5909.839 kb on - strand at 5909.860 kb on + strand at 5909.861 kb on - strand at 5909.882 kb on - strand, within AO353_26950 at 5909.893 kb on + strand, within AO353_26950 at 5909.894 kb on - strand, within AO353_26950 at 5909.894 kb on - strand, within AO353_26950 at 5909.894 kb on - strand, within AO353_26950 at 5909.910 kb on + strand, within AO353_26950 at 5909.910 kb on + strand, within AO353_26950 at 5909.964 kb on - strand, within AO353_26950 at 5909.999 kb on + strand, within AO353_26950 at 5910.000 kb on - strand, within AO353_26950 at 5910.000 kb on - strand, within AO353_26950
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0016 mg/ml remove 5,906,801 - AO353_26935 0.39 +0.6 5,906,813 - AO353_26935 0.40 -0.4 5,906,970 + AO353_26935 0.58 +0.1 5,907,225 + AO353_26935 0.88 -1.2 5,907,225 + AO353_26935 0.88 +0.7 5,907,300 + +1.6 5,907,301 - -0.1 5,907,314 + +0.9 5,907,314 + +0.6 5,907,314 + -0.2 5,907,350 - -0.6 5,907,358 + +1.9 5,907,358 + -1.7 5,907,358 + -0.7 5,907,358 + -1.2 5,907,358 + -2.5 5,907,358 + -1.1 5,907,358 + +0.8 5,907,358 + +1.7 5,907,358 + +1.3 5,907,358 + +1.2 5,907,358 + -0.7 5,907,358 + -0.4 5,907,359 - -1.4 5,907,359 - -0.4 5,907,359 - -1.4 5,907,359 - +1.0 5,907,359 - +0.3 5,907,359 - +0.3 5,907,359 - +0.1 5,907,359 - +1.0 5,907,359 - -1.0 5,907,359 - -1.3 5,907,359 - -0.9 5,907,359 - -3.1 5,907,359 - -1.0 5,907,425 - -0.4 5,907,425 - -1.4 5,907,442 - -0.4 5,907,542 + +0.8 5,907,542 + +0.9 5,907,542 + +0.4 5,907,542 + -1.0 5,907,542 + +0.6 5,907,542 + +0.8 5,907,543 - -0.7 5,907,543 - +0.4 5,907,545 + +1.0 5,907,545 + +1.0 5,907,546 - -0.7 5,907,546 - -1.5 5,907,782 + AO353_26940 0.21 -0.7 5,907,782 + AO353_26940 0.21 -0.7 5,907,782 + AO353_26940 0.21 +1.3 5,907,782 + AO353_26940 0.21 -0.3 5,907,782 + AO353_26940 0.21 -2.8 5,907,782 + AO353_26940 0.21 +0.3 5,907,782 + AO353_26940 0.21 -0.3 5,907,782 + AO353_26940 0.21 +1.3 5,907,782 + AO353_26940 0.21 -1.6 5,907,782 + AO353_26940 0.21 +0.3 5,907,782 + AO353_26940 0.21 +0.3 5,907,782 + AO353_26940 0.21 -0.7 5,907,782 + AO353_26940 0.21 +2.0 5,907,782 + AO353_26940 0.21 +1.1 5,907,783 - AO353_26940 0.21 -1.6 5,907,783 - AO353_26940 0.21 -1.0 5,907,783 - AO353_26940 0.21 -0.4 5,907,783 - AO353_26940 0.21 -1.2 5,907,783 - AO353_26940 0.21 -1.6 5,907,783 - AO353_26940 0.21 +1.3 5,907,783 - AO353_26940 0.21 +0.2 5,907,783 - AO353_26940 0.21 -1.2 5,907,783 - AO353_26940 0.21 +0.1 5,907,783 - AO353_26940 0.21 -0.4 5,907,783 - AO353_26940 0.21 -0.7 5,907,783 - AO353_26940 0.21 +0.4 5,907,783 - AO353_26940 0.21 -2.3 5,907,783 - AO353_26940 0.21 -0.7 5,907,783 - AO353_26940 0.21 -0.8 5,907,783 - AO353_26940 0.21 +0.9 5,907,783 - AO353_26940 0.21 -1.4 5,907,783 - AO353_26940 0.21 +0.0 5,907,783 - AO353_26940 0.21 +0.0 5,907,783 - AO353_26940 0.21 -2.1 5,907,783 - AO353_26940 0.21 -1.2 5,907,783 - +1.0 5,907,783 - AO353_26940 0.21 -2.5 5,907,783 - AO353_26940 0.21 -0.5 5,907,784 + AO353_26940 0.21 -2.2 5,907,784 + AO353_26940 0.21 -0.6 5,907,784 + AO353_26940 0.21 +1.6 5,907,784 + AO353_26940 0.21 -0.6 5,907,784 + AO353_26940 0.21 +0.1 5,907,784 + AO353_26940 0.21 -1.0 5,907,784 + AO353_26940 0.21 +0.3 5,907,784 + AO353_26940 0.21 +1.1 5,907,785 - AO353_26940 0.21 -1.4 5,907,785 - AO353_26940 0.21 -0.8 5,907,785 - AO353_26940 0.21 -0.4 5,907,785 - AO353_26940 0.21 -1.2 5,907,785 - AO353_26940 0.21 -1.4 5,907,785 - AO353_26940 0.21 +0.0 5,907,785 - AO353_26940 0.21 -2.3 5,907,785 - AO353_26940 0.21 -0.7 5,907,785 - AO353_26940 0.21 -2.0 5,907,785 - AO353_26940 0.21 +0.6 5,907,785 - AO353_26940 0.21 +1.2 5,907,785 - AO353_26940 0.21 -1.1 5,907,785 - AO353_26940 0.21 -1.2 5,907,785 - AO353_26940 0.21 +0.1 5,907,785 - AO353_26940 0.21 +0.9 5,907,785 - AO353_26940 0.21 -0.9 5,907,785 - AO353_26940 0.21 +0.6 5,907,785 - AO353_26940 0.21 +0.7 5,907,797 + AO353_26940 0.22 -1.9 5,907,797 + AO353_26940 0.22 -2.1 5,907,797 + AO353_26940 0.22 +0.0 5,907,797 + AO353_26940 0.22 -1.3 5,907,798 - AO353_26940 0.22 -1.6 5,907,798 - AO353_26940 0.22 -2.3 5,907,808 + AO353_26940 0.22 +0.2 5,907,809 - AO353_26940 0.22 -1.9 5,907,809 - AO353_26940 0.22 +0.6 5,907,836 - AO353_26940 0.24 -1.0 5,907,901 + AO353_26940 0.28 -0.1 5,907,901 + AO353_26940 0.28 -1.0 5,907,992 + AO353_26940 0.34 -0.6 5,907,992 + AO353_26940 0.34 -2.1 5,907,992 + AO353_26940 0.34 -0.5 5,907,992 + AO353_26940 0.34 -1.0 5,907,993 - AO353_26940 0.34 -0.2 5,907,998 + AO353_26940 0.35 +0.3 5,907,999 - AO353_26940 0.35 -2.0 5,907,999 - AO353_26940 0.35 -2.0 5,908,022 + AO353_26940 0.36 +1.4 5,908,023 - AO353_26940 0.36 -1.7 5,908,023 - AO353_26940 0.36 -1.2 5,908,026 + AO353_26940 0.36 +1.6 5,908,026 + AO353_26940 0.36 +0.5 5,908,062 - AO353_26940 0.39 -0.6 5,908,100 - AO353_26940 0.41 +1.0 5,908,112 + AO353_26940 0.42 -0.4 5,908,112 + AO353_26940 0.42 -1.2 5,908,112 + AO353_26940 0.42 +0.0 5,908,147 + AO353_26940 0.44 +0.0 5,908,147 + AO353_26940 0.44 +0.6 5,908,148 - AO353_26940 0.44 -2.0 5,908,226 + AO353_26940 0.49 -1.4 5,908,294 + AO353_26940 0.54 -1.6 5,908,294 + AO353_26940 0.54 +0.3 5,908,294 + AO353_26940 0.54 -0.3 5,908,295 - AO353_26940 0.54 -0.7 5,908,295 - AO353_26940 0.54 -1.4 5,908,295 - AO353_26940 0.54 +0.2 5,908,295 - AO353_26940 0.54 -0.6 5,908,295 - AO353_26940 0.54 -0.7 5,908,676 + AO353_26940 0.79 +0.5 5,908,676 + AO353_26940 0.79 +0.9 5,908,676 + AO353_26940 0.79 +0.6 5,908,676 + AO353_26940 0.79 +2.3 5,908,676 + AO353_26940 0.79 +0.5 5,908,676 + AO353_26940 0.79 +0.2 5,908,676 + AO353_26940 0.79 -0.7 5,908,677 - AO353_26940 0.79 -0.6 5,908,677 - AO353_26940 0.79 -1.4 5,908,677 - AO353_26940 0.79 -0.9 5,908,677 - AO353_26940 0.79 -0.5 5,908,677 - AO353_26940 0.79 +0.0 5,908,677 - AO353_26940 0.79 +1.1 5,908,677 - AO353_26940 0.79 +0.2 5,908,728 + AO353_26940 0.82 +1.4 5,908,729 - AO353_26940 0.82 -0.5 5,908,738 + AO353_26940 0.83 +0.2 5,908,738 + AO353_26940 0.83 -0.2 5,908,772 + AO353_26940 0.85 +1.6 5,908,772 + AO353_26940 0.85 +1.4 5,908,773 - AO353_26940 0.85 -1.4 5,908,906 + +2.4 5,908,906 + -2.0 5,908,906 + +0.8 5,908,907 - -0.5 5,908,943 - -2.6 5,908,946 + +1.4 5,908,946 + -1.7 5,908,947 - -1.6 5,908,999 + +1.4 5,909,000 - +0.5 5,909,000 - -0.6 5,909,000 - +0.6 5,909,003 + +1.1 5,909,003 + +0.7 5,909,081 - -0.2 5,909,121 + +1.6 5,909,121 + -1.2 5,909,122 - -0.7 5,909,124 + -2.0 5,909,179 + +0.3 5,909,180 - -0.9 5,909,180 - -2.2 5,909,195 + +0.6 5,909,195 + -0.9 5,909,195 + -1.1 5,909,196 - -2.2 5,909,197 + -0.3 5,909,198 - -0.7 5,909,198 - -0.9 5,909,233 - +2.7 5,909,241 - -0.4 5,909,246 + -1.5 5,909,246 + +0.4 5,909,246 + -1.6 5,909,247 - +1.6 5,909,386 + AO353_26945 0.38 -0.7 5,909,387 - AO353_26945 0.38 -0.4 5,909,494 + AO353_26945 0.68 +0.3 5,909,572 + AO353_26945 0.89 +0.6 5,909,572 + AO353_26945 0.89 -0.3 5,909,573 - AO353_26945 0.90 -1.2 5,909,608 + -0.5 5,909,608 + -0.7 5,909,608 + -1.2 5,909,609 - +2.0 5,909,609 - -2.0 5,909,657 - -1.9 5,909,657 - -0.1 5,909,666 + -1.2 5,909,667 - -0.4 5,909,667 - -0.7 5,909,667 - +0.6 5,909,667 - +0.3 5,909,669 - +0.2 5,909,669 - +0.5 5,909,669 - +0.8 5,909,669 - +1.0 5,909,672 + -1.6 5,909,672 + -1.1 5,909,673 - +0.3 5,909,673 - -0.1 5,909,716 + -0.3 5,909,717 - -1.4 5,909,746 + -1.0 5,909,747 - +0.9 5,909,806 + -1.4 5,909,806 + -0.1 5,909,807 - -0.3 5,909,807 - -0.7 5,909,809 + -0.4 5,909,810 - -0.4 5,909,810 - -0.7 5,909,810 - +0.7 5,909,839 - -1.9 5,909,860 + +0.9 5,909,861 - -0.3 5,909,882 - AO353_26950 0.14 -0.7 5,909,893 + AO353_26950 0.16 -0.4 5,909,894 - AO353_26950 0.16 +0.7 5,909,894 - AO353_26950 0.16 -1.2 5,909,894 - AO353_26950 0.16 +0.0 5,909,910 + AO353_26950 0.19 +0.6 5,909,910 + AO353_26950 0.19 -0.7 5,909,964 - AO353_26950 0.29 -0.1 5,909,999 + AO353_26950 0.36 +1.3 5,910,000 - AO353_26950 0.36 +0.0 5,910,000 - AO353_26950 0.36 -2.3
Or see this region's nucleotide sequence