Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25130

Experiment: Tetracycline 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25120 and AO353_25125 overlap by 4 nucleotidesAO353_25125 and AO353_25130 are separated by 27 nucleotidesAO353_25130 and AO353_25135 are separated by 29 nucleotides AO353_25120: AO353_25120 - ABC transporter permease, at 5,541,240 to 5,542,202 _25120 AO353_25125: AO353_25125 - sugar ABC transporter permease, at 5,542,199 to 5,543,041 _25125 AO353_25130: AO353_25130 - ABC transporter, at 5,543,069 to 5,544,214 _25130 AO353_25135: AO353_25135 - glycosyl hydrolase family 32, at 5,544,244 to 5,545,713 _25135 Position (kb) 5543 5544 5545Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5542.161 kb on + strandat 5542.161 kb on + strandat 5542.161 kb on + strandat 5542.161 kb on + strandat 5542.162 kb on - strandat 5542.162 kb on - strandat 5542.162 kb on - strandat 5542.168 kb on - strandat 5542.271 kb on + strandat 5542.271 kb on + strandat 5542.271 kb on + strandat 5542.271 kb on + strandat 5542.272 kb on - strandat 5542.272 kb on - strandat 5542.272 kb on - strandat 5542.289 kb on + strand, within AO353_25125at 5542.289 kb on + strand, within AO353_25125at 5542.290 kb on - strand, within AO353_25125at 5542.290 kb on - strand, within AO353_25125at 5542.290 kb on - strandat 5542.343 kb on + strand, within AO353_25125at 5542.343 kb on + strand, within AO353_25125at 5542.344 kb on - strand, within AO353_25125at 5542.344 kb on - strand, within AO353_25125at 5542.373 kb on + strand, within AO353_25125at 5542.374 kb on - strand, within AO353_25125at 5542.521 kb on + strand, within AO353_25125at 5542.566 kb on + strand, within AO353_25125at 5542.567 kb on - strand, within AO353_25125at 5542.607 kb on + strand, within AO353_25125at 5542.607 kb on + strand, within AO353_25125at 5542.607 kb on + strand, within AO353_25125at 5542.608 kb on - strand, within AO353_25125at 5542.608 kb on - strand, within AO353_25125at 5542.637 kb on + strand, within AO353_25125at 5542.637 kb on + strand, within AO353_25125at 5542.637 kb on + strand, within AO353_25125at 5542.637 kb on + strand, within AO353_25125at 5542.637 kb on + strand, within AO353_25125at 5542.803 kb on + strand, within AO353_25125at 5542.804 kb on - strand, within AO353_25125at 5542.813 kb on + strand, within AO353_25125at 5543.053 kb on + strandat 5543.053 kb on + strandat 5543.053 kb on + strandat 5543.053 kb on + strandat 5543.054 kb on - strandat 5543.086 kb on - strandat 5543.086 kb on - strandat 5543.086 kb on - strandat 5543.319 kb on - strand, within AO353_25130at 5543.327 kb on + strand, within AO353_25130at 5543.633 kb on + strand, within AO353_25130at 5543.633 kb on + strand, within AO353_25130at 5543.633 kb on + strand, within AO353_25130at 5543.633 kb on + strand, within AO353_25130at 5543.633 kb on + strandat 5543.633 kb on + strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.634 kb on - strand, within AO353_25130at 5543.732 kb on + strand, within AO353_25130at 5543.732 kb on + strand, within AO353_25130at 5543.733 kb on - strand, within AO353_25130at 5543.733 kb on - strand, within AO353_25130at 5543.733 kb on - strand, within AO353_25130at 5543.733 kb on - strand, within AO353_25130at 5543.851 kb on + strand, within AO353_25130at 5543.928 kb on + strand, within AO353_25130at 5543.928 kb on + strand, within AO353_25130at 5543.928 kb on + strand, within AO353_25130at 5543.928 kb on + strand, within AO353_25130at 5543.929 kb on - strand, within AO353_25130at 5543.981 kb on + strand, within AO353_25130at 5543.982 kb on - strand, within AO353_25130at 5543.999 kb on + strand, within AO353_25130at 5543.999 kb on + strand, within AO353_25130at 5543.999 kb on + strand, within AO353_25130at 5543.999 kb on + strand, within AO353_25130at 5543.999 kb on + strand, within AO353_25130at 5544.000 kb on - strand, within AO353_25130at 5544.000 kb on - strand, within AO353_25130at 5544.000 kb on - strand, within AO353_25130at 5544.000 kb on - strand, within AO353_25130at 5544.000 kb on - strand, within AO353_25130at 5544.104 kb on - strandat 5544.327 kb on + strandat 5544.327 kb on + strandat 5544.327 kb on + strandat 5544.328 kb on - strandat 5544.328 kb on - strandat 5544.373 kb on + strandat 5544.373 kb on + strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.374 kb on - strandat 5544.388 kb on + strandat 5544.389 kb on - strandat 5544.400 kb on + strand, within AO353_25135at 5544.409 kb on + strand, within AO353_25135at 5544.409 kb on + strand, within AO353_25135at 5544.410 kb on - strandat 5544.439 kb on + strand, within AO353_25135at 5544.439 kb on + strand, within AO353_25135at 5544.439 kb on + strand, within AO353_25135at 5544.440 kb on - strand, within AO353_25135at 5544.440 kb on - strand, within AO353_25135at 5544.440 kb on - strand, within AO353_25135at 5544.561 kb on + strand, within AO353_25135at 5544.577 kb on + strand, within AO353_25135at 5544.577 kb on + strand, within AO353_25135at 5544.651 kb on + strand, within AO353_25135at 5544.737 kb on + strand, within AO353_25135at 5544.738 kb on - strand, within AO353_25135at 5544.738 kb on - strand, within AO353_25135at 5544.738 kb on - strand, within AO353_25135at 5544.738 kb on - strand, within AO353_25135at 5544.760 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.791 kb on + strand, within AO353_25135at 5544.792 kb on - strand, within AO353_25135at 5544.792 kb on - strand, within AO353_25135at 5544.809 kb on - strand, within AO353_25135at 5544.809 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.848 kb on - strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.877 kb on + strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.878 kb on - strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.879 kb on + strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.880 kb on - strand, within AO353_25135at 5544.923 kb on + strand, within AO353_25135at 5544.923 kb on + strand, within AO353_25135at 5544.923 kb on + strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.924 kb on - strand, within AO353_25135at 5544.932 kb on - strand, within AO353_25135at 5544.961 kb on + strand, within AO353_25135at 5544.979 kb on + strand, within AO353_25135at 5544.980 kb on - strand, within AO353_25135at 5545.069 kb on + strand, within AO353_25135at 5545.070 kb on - strand, within AO353_25135at 5545.070 kb on - strand, within AO353_25135at 5545.085 kb on + strand, within AO353_25135

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0016 mg/ml
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5,542,161 + -0.7
5,542,161 + -0.7
5,542,161 + -0.2
5,542,161 + -2.0
5,542,162 - +0.4
5,542,162 - +0.5
5,542,162 - +0.9
5,542,168 - -2.0
5,542,271 + +0.3
5,542,271 + -0.5
5,542,271 + -0.1
5,542,271 + +0.5
5,542,272 - -1.5
5,542,272 - -1.7
5,542,272 - -0.5
5,542,289 + AO353_25125 0.11 -1.0
5,542,289 + AO353_25125 0.11 -0.2
5,542,290 - AO353_25125 0.11 -2.7
5,542,290 - AO353_25125 0.11 +1.9
5,542,290 - +0.5
5,542,343 + AO353_25125 0.17 +0.2
5,542,343 + AO353_25125 0.17 -0.2
5,542,344 - AO353_25125 0.17 -0.8
5,542,344 - AO353_25125 0.17 +0.8
5,542,373 + AO353_25125 0.21 +0.0
5,542,374 - AO353_25125 0.21 +1.4
5,542,521 + AO353_25125 0.38 +0.8
5,542,566 + AO353_25125 0.44 -0.2
5,542,567 - AO353_25125 0.44 -0.1
5,542,607 + AO353_25125 0.48 +1.2
5,542,607 + AO353_25125 0.48 +1.8
5,542,607 + AO353_25125 0.48 +1.0
5,542,608 - AO353_25125 0.49 +0.2
5,542,608 - AO353_25125 0.49 +2.0
5,542,637 + AO353_25125 0.52 -2.0
5,542,637 + AO353_25125 0.52 +0.9
5,542,637 + AO353_25125 0.52 -2.3
5,542,637 + AO353_25125 0.52 -0.3
5,542,637 + AO353_25125 0.52 -0.0
5,542,803 + AO353_25125 0.72 -1.1
5,542,804 - AO353_25125 0.72 +0.9
5,542,813 + AO353_25125 0.73 -1.1
5,543,053 + -2.7
5,543,053 + +0.2
5,543,053 + -2.1
5,543,053 + +2.0
5,543,054 - -2.2
5,543,086 - +2.2
5,543,086 - +0.9
5,543,086 - -0.5
5,543,319 - AO353_25130 0.22 -1.5
5,543,327 + AO353_25130 0.23 +0.9
5,543,633 + AO353_25130 0.49 +0.5
5,543,633 + AO353_25130 0.49 +1.3
5,543,633 + AO353_25130 0.49 +0.5
5,543,633 + AO353_25130 0.49 +1.3
5,543,633 + -0.1
5,543,633 + AO353_25130 0.49 +0.3
5,543,634 - AO353_25130 0.49 -1.7
5,543,634 - AO353_25130 0.49 +1.5
5,543,634 - AO353_25130 0.49 -1.3
5,543,634 - AO353_25130 0.49 +0.1
5,543,634 - AO353_25130 0.49 +0.6
5,543,634 - AO353_25130 0.49 -2.3
5,543,732 + AO353_25130 0.58 +1.0
5,543,732 + AO353_25130 0.58 -1.8
5,543,733 - AO353_25130 0.58 +0.2
5,543,733 - AO353_25130 0.58 +1.1
5,543,733 - AO353_25130 0.58 -0.3
5,543,733 - AO353_25130 0.58 -0.5
5,543,851 + AO353_25130 0.68 +0.8
5,543,928 + AO353_25130 0.75 -0.2
5,543,928 + AO353_25130 0.75 -0.9
5,543,928 + AO353_25130 0.75 +0.2
5,543,928 + AO353_25130 0.75 -0.3
5,543,929 - AO353_25130 0.75 +1.0
5,543,981 + AO353_25130 0.80 +0.8
5,543,982 - AO353_25130 0.80 +1.0
5,543,999 + AO353_25130 0.81 -1.1
5,543,999 + AO353_25130 0.81 -0.5
5,543,999 + AO353_25130 0.81 +0.8
5,543,999 + AO353_25130 0.81 +0.5
5,543,999 + AO353_25130 0.81 +1.9
5,544,000 - AO353_25130 0.81 -1.3
5,544,000 - AO353_25130 0.81 +0.5
5,544,000 - AO353_25130 0.81 -1.5
5,544,000 - AO353_25130 0.81 +1.8
5,544,000 - AO353_25130 0.81 -0.7
5,544,104 - +0.8
5,544,327 + -0.7
5,544,327 + -0.5
5,544,327 + -1.1
5,544,328 - +1.0
5,544,328 - -1.1
5,544,373 + +0.9
5,544,373 + -0.2
5,544,374 - -2.0
5,544,374 - -0.9
5,544,374 - -0.5
5,544,374 - -1.3
5,544,374 - +0.5
5,544,374 - +1.2
5,544,374 - -0.5
5,544,388 + +0.0
5,544,389 - +1.7
5,544,400 + AO353_25135 0.11 -2.0
5,544,409 + AO353_25135 0.11 -0.1
5,544,409 + AO353_25135 0.11 -1.7
5,544,410 - -0.1
5,544,439 + AO353_25135 0.13 -0.3
5,544,439 + AO353_25135 0.13 -0.5
5,544,439 + AO353_25135 0.13 +3.3
5,544,440 - AO353_25135 0.13 +0.2
5,544,440 - AO353_25135 0.13 +0.1
5,544,440 - AO353_25135 0.13 +0.2
5,544,561 + AO353_25135 0.22 +0.5
5,544,577 + AO353_25135 0.23 +1.2
5,544,577 + AO353_25135 0.23 +1.3
5,544,651 + AO353_25135 0.28 -1.1
5,544,737 + AO353_25135 0.34 +1.5
5,544,738 - AO353_25135 0.34 -0.7
5,544,738 - AO353_25135 0.34 +0.5
5,544,738 - AO353_25135 0.34 -2.4
5,544,738 - AO353_25135 0.34 -0.5
5,544,760 + AO353_25135 0.35 +0.0
5,544,791 + AO353_25135 0.37 +1.8
5,544,791 + AO353_25135 0.37 +1.3
5,544,791 + AO353_25135 0.37 +0.2
5,544,791 + AO353_25135 0.37 -0.2
5,544,791 + AO353_25135 0.37 +0.1
5,544,792 - AO353_25135 0.37 +1.7
5,544,792 - AO353_25135 0.37 -0.4
5,544,809 - AO353_25135 0.38 -0.5
5,544,809 - AO353_25135 0.38 +1.5
5,544,848 - AO353_25135 0.41 +1.2
5,544,848 - AO353_25135 0.41 +0.3
5,544,848 - AO353_25135 0.41 -0.6
5,544,848 - AO353_25135 0.41 -0.2
5,544,877 + AO353_25135 0.43 -2.3
5,544,877 + AO353_25135 0.43 -0.4
5,544,877 + AO353_25135 0.43 -0.3
5,544,877 + AO353_25135 0.43 +1.3
5,544,877 + AO353_25135 0.43 +0.9
5,544,878 - AO353_25135 0.43 +1.9
5,544,878 - AO353_25135 0.43 -0.0
5,544,878 - AO353_25135 0.43 -0.8
5,544,878 - AO353_25135 0.43 -0.5
5,544,878 - AO353_25135 0.43 -0.1
5,544,878 - AO353_25135 0.43 +0.2
5,544,879 + AO353_25135 0.43 -1.5
5,544,879 + AO353_25135 0.43 -0.5
5,544,879 + AO353_25135 0.43 +2.0
5,544,879 + AO353_25135 0.43 -0.1
5,544,879 + AO353_25135 0.43 -0.1
5,544,879 + AO353_25135 0.43 +0.8
5,544,879 + AO353_25135 0.43 -1.8
5,544,879 + AO353_25135 0.43 -0.1
5,544,879 + AO353_25135 0.43 -1.1
5,544,879 + AO353_25135 0.43 -0.2
5,544,880 - AO353_25135 0.43 -1.2
5,544,880 - AO353_25135 0.43 -0.3
5,544,880 - AO353_25135 0.43 -0.7
5,544,880 - AO353_25135 0.43 -1.7
5,544,880 - AO353_25135 0.43 +2.8
5,544,880 - AO353_25135 0.43 +0.2
5,544,880 - AO353_25135 0.43 -0.2
5,544,880 - AO353_25135 0.43 +0.7
5,544,880 - AO353_25135 0.43 -1.1
5,544,880 - AO353_25135 0.43 -1.1
5,544,880 - AO353_25135 0.43 -0.7
5,544,923 + AO353_25135 0.46 -0.1
5,544,923 + AO353_25135 0.46 +1.4
5,544,923 + AO353_25135 0.46 -0.4
5,544,924 - AO353_25135 0.46 +0.9
5,544,924 - AO353_25135 0.46 -1.1
5,544,924 - AO353_25135 0.46 +2.2
5,544,924 - AO353_25135 0.46 -1.3
5,544,932 - AO353_25135 0.47 +3.1
5,544,961 + AO353_25135 0.49 -0.7
5,544,979 + AO353_25135 0.50 -0.2
5,544,980 - AO353_25135 0.50 -0.5
5,545,069 + AO353_25135 0.56 -0.2
5,545,070 - AO353_25135 0.56 -1.0
5,545,070 - AO353_25135 0.56 +0.5
5,545,085 + AO353_25135 0.57 -0.8

Or see this region's nucleotide sequence