Experiment: Tetracycline 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22490 and AO353_22495 are separated by 693 nucleotides AO353_22495 and AO353_22500 are separated by 269 nucleotides AO353_22500 and AO353_22505 are separated by 250 nucleotides
AO353_22490: AO353_22490 - hypothetical protein, at 4,933,368 to 4,933,724
_22490
AO353_22495: AO353_22495 - diguanylate cyclase, at 4,934,418 to 4,935,968
_22495
AO353_22500: AO353_22500 - hypothetical protein, at 4,936,238 to 4,936,432
_22500
AO353_22505: AO353_22505 - hypothetical protein, at 4,936,683 to 4,937,039
_22505
Position (kb) 4934
4935
4936 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4933.449 kb on + strand, within AO353_22490 at 4933.450 kb on - strand, within AO353_22490 at 4933.797 kb on - strand at 4933.842 kb on - strand at 4934.036 kb on - strand at 4934.046 kb on + strand at 4934.046 kb on + strand at 4934.046 kb on + strand at 4934.046 kb on + strand at 4934.046 kb on + strand at 4934.047 kb on - strand at 4934.047 kb on - strand at 4934.047 kb on - strand at 4934.249 kb on + strand at 4934.249 kb on + strand at 4934.250 kb on - strand at 4934.250 kb on - strand at 4934.250 kb on - strand at 4934.255 kb on + strand at 4934.255 kb on + strand at 4934.255 kb on + strand at 4934.255 kb on + strand at 4934.256 kb on - strand at 4934.340 kb on - strand at 4934.379 kb on + strand at 4934.380 kb on - strand at 4934.419 kb on + strand at 4934.419 kb on + strand at 4934.419 kb on + strand at 4934.420 kb on - strand at 4934.420 kb on - strand at 4934.428 kb on - strand at 4934.464 kb on + strand at 4934.464 kb on + strand at 4934.464 kb on + strand at 4934.465 kb on - strand at 4934.465 kb on - strand at 4934.465 kb on - strand at 4934.465 kb on - strand at 4934.465 kb on - strand at 4934.465 kb on - strand at 4934.531 kb on + strand at 4934.532 kb on - strand at 4934.532 kb on - strand at 4934.581 kb on - strand, within AO353_22495 at 4934.581 kb on - strand, within AO353_22495 at 4934.581 kb on - strand, within AO353_22495 at 4934.581 kb on - strand, within AO353_22495 at 4934.638 kb on + strand, within AO353_22495 at 4934.638 kb on + strand, within AO353_22495 at 4934.639 kb on - strand, within AO353_22495 at 4934.639 kb on - strand, within AO353_22495 at 4934.655 kb on + strand, within AO353_22495 at 4934.709 kb on + strand, within AO353_22495 at 4934.710 kb on - strand, within AO353_22495 at 4934.724 kb on + strand, within AO353_22495 at 4934.725 kb on - strand, within AO353_22495 at 4934.760 kb on + strand, within AO353_22495 at 4934.760 kb on + strand, within AO353_22495 at 4934.760 kb on + strand, within AO353_22495 at 4934.760 kb on + strand, within AO353_22495 at 4934.782 kb on + strand, within AO353_22495 at 4934.782 kb on + strand, within AO353_22495 at 4934.782 kb on + strand, within AO353_22495 at 4934.783 kb on - strand, within AO353_22495 at 4934.783 kb on - strand, within AO353_22495 at 4934.783 kb on - strand, within AO353_22495 at 4934.865 kb on + strand, within AO353_22495 at 4934.865 kb on + strand, within AO353_22495 at 4934.866 kb on - strand, within AO353_22495 at 4934.866 kb on - strand, within AO353_22495 at 4934.953 kb on + strand, within AO353_22495 at 4934.953 kb on + strand, within AO353_22495 at 4934.953 kb on + strand, within AO353_22495 at 4934.954 kb on - strand, within AO353_22495 at 4934.954 kb on - strand, within AO353_22495 at 4935.029 kb on + strand, within AO353_22495 at 4935.045 kb on + strand, within AO353_22495 at 4935.046 kb on - strand, within AO353_22495 at 4935.048 kb on + strand, within AO353_22495 at 4935.102 kb on + strand, within AO353_22495 at 4935.102 kb on + strand, within AO353_22495 at 4935.165 kb on + strand, within AO353_22495 at 4935.165 kb on + strand, within AO353_22495 at 4935.166 kb on - strand, within AO353_22495 at 4935.199 kb on - strand, within AO353_22495 at 4935.232 kb on - strand, within AO353_22495 at 4935.258 kb on + strand, within AO353_22495 at 4935.258 kb on + strand, within AO353_22495 at 4935.263 kb on + strand, within AO353_22495 at 4935.264 kb on - strand, within AO353_22495 at 4935.264 kb on - strand, within AO353_22495 at 4935.379 kb on + strand, within AO353_22495 at 4935.379 kb on + strand, within AO353_22495 at 4935.379 kb on + strand, within AO353_22495 at 4935.379 kb on + strand, within AO353_22495 at 4935.379 kb on + strand, within AO353_22495 at 4935.380 kb on - strand, within AO353_22495 at 4935.380 kb on - strand, within AO353_22495 at 4935.384 kb on + strand, within AO353_22495 at 4935.385 kb on - strand, within AO353_22495 at 4935.385 kb on - strand, within AO353_22495 at 4935.385 kb on - strand, within AO353_22495 at 4935.389 kb on - strand, within AO353_22495 at 4935.483 kb on + strand, within AO353_22495 at 4935.484 kb on - strand, within AO353_22495 at 4935.484 kb on - strand, within AO353_22495 at 4935.499 kb on + strand at 4935.499 kb on + strand, within AO353_22495 at 4935.500 kb on - strand, within AO353_22495 at 4935.500 kb on - strand, within AO353_22495 at 4935.529 kb on + strand, within AO353_22495 at 4935.613 kb on + strand, within AO353_22495 at 4935.613 kb on + strand, within AO353_22495 at 4935.631 kb on - strand, within AO353_22495 at 4935.631 kb on - strand, within AO353_22495 at 4935.631 kb on - strand, within AO353_22495 at 4935.631 kb on - strand, within AO353_22495 at 4935.664 kb on - strand, within AO353_22495 at 4935.729 kb on + strand, within AO353_22495 at 4935.730 kb on - strand, within AO353_22495 at 4935.731 kb on + strand, within AO353_22495 at 4935.731 kb on + strand, within AO353_22495 at 4935.731 kb on + strand, within AO353_22495 at 4935.732 kb on - strand, within AO353_22495 at 4935.736 kb on - strand, within AO353_22495 at 4935.854 kb on + strand at 4935.855 kb on - strand at 4935.879 kb on + strand at 4935.880 kb on - strand at 4935.880 kb on - strand at 4935.998 kb on + strand at 4935.999 kb on - strand at 4936.007 kb on + strand at 4936.205 kb on + strand at 4936.210 kb on + strand at 4936.210 kb on + strand at 4936.210 kb on + strand at 4936.210 kb on + strand at 4936.211 kb on - strand at 4936.247 kb on - strand at 4936.247 kb on - strand at 4936.291 kb on + strand, within AO353_22500 at 4936.373 kb on + strand, within AO353_22500 at 4936.373 kb on + strand, within AO353_22500 at 4936.431 kb on - strand at 4936.563 kb on - strand at 4936.573 kb on + strand at 4936.574 kb on - strand at 4936.580 kb on + strand at 4936.656 kb on - strand at 4936.684 kb on + strand at 4936.685 kb on - strand at 4936.685 kb on - strand at 4936.714 kb on + strand at 4936.714 kb on + strand at 4936.715 kb on - strand at 4936.715 kb on - strand at 4936.715 kb on - strand at 4936.715 kb on - strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.718 kb on + strand at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.719 kb on - strand, within AO353_22505 at 4936.725 kb on - strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.768 kb on + strand, within AO353_22505 at 4936.769 kb on - strand, within AO353_22505 at 4936.769 kb on - strand, within AO353_22505 at 4936.776 kb on + strand, within AO353_22505 at 4936.776 kb on + strand, within AO353_22505 at 4936.777 kb on - strand, within AO353_22505 at 4936.797 kb on + strand, within AO353_22505 at 4936.797 kb on + strand, within AO353_22505 at 4936.797 kb on + strand, within AO353_22505 at 4936.797 kb on + strand, within AO353_22505 at 4936.797 kb on + strand, within AO353_22505 at 4936.798 kb on - strand, within AO353_22505 at 4936.798 kb on - strand, within AO353_22505 at 4936.798 kb on - strand, within AO353_22505 at 4936.800 kb on + strand, within AO353_22505 at 4936.801 kb on - strand, within AO353_22505 at 4936.801 kb on - strand, within AO353_22505 at 4936.801 kb on - strand, within AO353_22505 at 4936.830 kb on + strand, within AO353_22505 at 4936.935 kb on + strand, within AO353_22505 at 4936.935 kb on + strand, within AO353_22505
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0016 mg/ml remove 4,933,449 + AO353_22490 0.23 -0.7 4,933,450 - AO353_22490 0.23 +0.6 4,933,797 - -2.1 4,933,842 - +0.0 4,934,036 - +1.0 4,934,046 + +0.8 4,934,046 + -0.2 4,934,046 + -0.9 4,934,046 + -1.2 4,934,046 + +0.4 4,934,047 - +0.6 4,934,047 - +0.6 4,934,047 - -0.4 4,934,249 + -1.2 4,934,249 + -1.4 4,934,250 - +1.0 4,934,250 - +2.1 4,934,250 - +1.0 4,934,255 + -1.0 4,934,255 + +1.9 4,934,255 + -0.2 4,934,255 + +0.3 4,934,256 - +1.0 4,934,340 - -0.4 4,934,379 + -0.7 4,934,380 - -0.9 4,934,419 + -1.4 4,934,419 + +0.6 4,934,419 + +1.2 4,934,420 - -1.4 4,934,420 - +0.4 4,934,428 - -1.1 4,934,464 + +0.2 4,934,464 + +0.3 4,934,464 + -1.2 4,934,465 - -0.5 4,934,465 - +0.0 4,934,465 - +1.1 4,934,465 - +0.3 4,934,465 - -2.5 4,934,465 - +0.0 4,934,531 + +2.3 4,934,532 - -2.9 4,934,532 - -1.4 4,934,581 - AO353_22495 0.11 -0.3 4,934,581 - AO353_22495 0.11 +1.0 4,934,581 - AO353_22495 0.11 +0.5 4,934,581 - AO353_22495 0.11 -0.2 4,934,638 + AO353_22495 0.14 -0.7 4,934,638 + AO353_22495 0.14 -0.9 4,934,639 - AO353_22495 0.14 -0.0 4,934,639 - AO353_22495 0.14 +0.7 4,934,655 + AO353_22495 0.15 +1.4 4,934,709 + AO353_22495 0.19 +0.9 4,934,710 - AO353_22495 0.19 -1.7 4,934,724 + AO353_22495 0.20 +0.1 4,934,725 - AO353_22495 0.20 -0.4 4,934,760 + AO353_22495 0.22 +0.9 4,934,760 + AO353_22495 0.22 -0.7 4,934,760 + AO353_22495 0.22 +0.0 4,934,760 + AO353_22495 0.22 -0.9 4,934,782 + AO353_22495 0.23 +1.0 4,934,782 + AO353_22495 0.23 -0.2 4,934,782 + AO353_22495 0.23 -0.8 4,934,783 - AO353_22495 0.24 +0.4 4,934,783 - AO353_22495 0.24 +0.9 4,934,783 - AO353_22495 0.24 +0.6 4,934,865 + AO353_22495 0.29 +0.0 4,934,865 + AO353_22495 0.29 -0.3 4,934,866 - AO353_22495 0.29 -1.0 4,934,866 - AO353_22495 0.29 -0.6 4,934,953 + AO353_22495 0.34 -0.1 4,934,953 + AO353_22495 0.34 -1.0 4,934,953 + AO353_22495 0.34 -0.3 4,934,954 - AO353_22495 0.35 -0.6 4,934,954 - AO353_22495 0.35 -2.2 4,935,029 + AO353_22495 0.39 -0.2 4,935,045 + AO353_22495 0.40 -1.0 4,935,046 - AO353_22495 0.40 -0.9 4,935,048 + AO353_22495 0.41 -2.0 4,935,102 + AO353_22495 0.44 +0.3 4,935,102 + AO353_22495 0.44 -1.2 4,935,165 + AO353_22495 0.48 +0.5 4,935,165 + AO353_22495 0.48 -0.9 4,935,166 - AO353_22495 0.48 +0.6 4,935,199 - AO353_22495 0.50 -0.7 4,935,232 - AO353_22495 0.52 +0.2 4,935,258 + AO353_22495 0.54 -0.4 4,935,258 + AO353_22495 0.54 +0.0 4,935,263 + AO353_22495 0.54 +2.3 4,935,264 - AO353_22495 0.55 -0.7 4,935,264 - AO353_22495 0.55 -1.5 4,935,379 + AO353_22495 0.62 -1.2 4,935,379 + AO353_22495 0.62 +0.3 4,935,379 + AO353_22495 0.62 +0.9 4,935,379 + AO353_22495 0.62 +0.1 4,935,379 + AO353_22495 0.62 -0.1 4,935,380 - AO353_22495 0.62 -0.2 4,935,380 - AO353_22495 0.62 -1.0 4,935,384 + AO353_22495 0.62 -0.8 4,935,385 - AO353_22495 0.62 +0.3 4,935,385 - AO353_22495 0.62 -1.0 4,935,385 - AO353_22495 0.62 +1.8 4,935,389 - AO353_22495 0.63 +0.6 4,935,483 + AO353_22495 0.69 +0.9 4,935,484 - AO353_22495 0.69 +2.2 4,935,484 - AO353_22495 0.69 -0.4 4,935,499 + +0.6 4,935,499 + AO353_22495 0.70 -0.5 4,935,500 - AO353_22495 0.70 +0.9 4,935,500 - AO353_22495 0.70 +0.6 4,935,529 + AO353_22495 0.72 -1.1 4,935,613 + AO353_22495 0.77 +1.6 4,935,613 + AO353_22495 0.77 +0.8 4,935,631 - AO353_22495 0.78 -1.2 4,935,631 - AO353_22495 0.78 -0.1 4,935,631 - AO353_22495 0.78 +0.4 4,935,631 - AO353_22495 0.78 -1.1 4,935,664 - AO353_22495 0.80 -1.8 4,935,729 + AO353_22495 0.85 -0.1 4,935,730 - AO353_22495 0.85 -0.2 4,935,731 + AO353_22495 0.85 -1.9 4,935,731 + AO353_22495 0.85 +2.0 4,935,731 + AO353_22495 0.85 -1.0 4,935,732 - AO353_22495 0.85 +0.5 4,935,736 - AO353_22495 0.85 +1.2 4,935,854 + +1.2 4,935,855 - +0.4 4,935,879 + +0.3 4,935,880 - +0.6 4,935,880 - +1.2 4,935,998 + -0.2 4,935,999 - -2.6 4,936,007 + -1.7 4,936,205 + -0.7 4,936,210 + -1.1 4,936,210 + -0.7 4,936,210 + -3.1 4,936,210 + -0.1 4,936,211 - -0.5 4,936,247 - +0.1 4,936,247 - +0.7 4,936,291 + AO353_22500 0.27 -0.2 4,936,373 + AO353_22500 0.69 -0.6 4,936,373 + AO353_22500 0.69 +0.4 4,936,431 - -0.5 4,936,563 - -0.6 4,936,573 + +0.0 4,936,574 - -0.9 4,936,580 + +1.2 4,936,656 - -0.4 4,936,684 + +1.8 4,936,685 - +0.9 4,936,685 - +0.0 4,936,714 + +0.0 4,936,714 + -0.3 4,936,715 - -0.7 4,936,715 - +0.3 4,936,715 - -0.8 4,936,715 - -0.9 4,936,718 + +0.6 4,936,718 + -0.1 4,936,718 + -1.0 4,936,718 + +0.3 4,936,718 + +0.3 4,936,718 + -1.0 4,936,718 + -1.6 4,936,719 - AO353_22505 0.10 +0.1 4,936,719 - AO353_22505 0.10 +2.2 4,936,719 - AO353_22505 0.10 +0.6 4,936,719 - AO353_22505 0.10 +0.1 4,936,719 - AO353_22505 0.10 -0.1 4,936,719 - AO353_22505 0.10 +0.8 4,936,719 - AO353_22505 0.10 -1.7 4,936,719 - AO353_22505 0.10 +0.2 4,936,719 - AO353_22505 0.10 +0.4 4,936,725 - AO353_22505 0.12 +0.9 4,936,768 + AO353_22505 0.24 +0.0 4,936,768 + AO353_22505 0.24 -0.9 4,936,768 + AO353_22505 0.24 -0.9 4,936,768 + AO353_22505 0.24 -1.7 4,936,768 + AO353_22505 0.24 +0.8 4,936,768 + AO353_22505 0.24 +0.8 4,936,769 - AO353_22505 0.24 -0.4 4,936,769 - AO353_22505 0.24 -1.6 4,936,776 + AO353_22505 0.26 +0.4 4,936,776 + AO353_22505 0.26 +0.0 4,936,777 - AO353_22505 0.26 +0.5 4,936,797 + AO353_22505 0.32 -1.9 4,936,797 + AO353_22505 0.32 -1.0 4,936,797 + AO353_22505 0.32 +0.3 4,936,797 + AO353_22505 0.32 -1.9 4,936,797 + AO353_22505 0.32 +1.6 4,936,798 - AO353_22505 0.32 -0.4 4,936,798 - AO353_22505 0.32 +1.5 4,936,798 - AO353_22505 0.32 +0.3 4,936,800 + AO353_22505 0.33 -1.6 4,936,801 - AO353_22505 0.33 -1.4 4,936,801 - AO353_22505 0.33 -1.7 4,936,801 - AO353_22505 0.33 -1.0 4,936,830 + AO353_22505 0.41 +3.9 4,936,935 + AO353_22505 0.71 +0.9 4,936,935 + AO353_22505 0.71 -1.1
Or see this region's nucleotide sequence