Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22320

Experiment: Tetracycline 0.0016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22315 and AO353_22320 are separated by 333 nucleotidesAO353_22320 and AO353_22325 are separated by 23 nucleotidesAO353_22325 and AO353_22330 overlap by 4 nucleotides AO353_22315: AO353_22315 - MFS transporter, at 4,887,395 to 4,888,606 _22315 AO353_22320: AO353_22320 - hypothetical protein, at 4,888,940 to 4,889,125 _22320 AO353_22325: AO353_22325 - short-chain dehydrogenase, at 4,889,149 to 4,889,898 _22325 AO353_22330: AO353_22330 - AraC family transcriptional regulator, at 4,889,895 to 4,890,815 _22330 Position (kb) 4888 4889 4890Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4888.104 kb on - strand, within AO353_22315at 4888.241 kb on + strand, within AO353_22315at 4888.242 kb on - strand, within AO353_22315at 4888.378 kb on + strand, within AO353_22315at 4888.378 kb on + strand, within AO353_22315at 4888.379 kb on - strandat 4888.379 kb on - strand, within AO353_22315at 4888.379 kb on - strand, within AO353_22315at 4888.446 kb on + strand, within AO353_22315at 4888.447 kb on - strand, within AO353_22315at 4888.459 kb on + strand, within AO353_22315at 4888.460 kb on - strand, within AO353_22315at 4888.484 kb on + strand, within AO353_22315at 4888.485 kb on - strandat 4888.501 kb on - strandat 4888.510 kb on - strandat 4888.556 kb on + strandat 4888.556 kb on + strandat 4888.557 kb on - strandat 4888.557 kb on - strandat 4888.557 kb on - strandat 4888.557 kb on - strandat 4888.594 kb on + strandat 4888.595 kb on - strandat 4888.598 kb on + strandat 4888.599 kb on - strandat 4888.599 kb on - strandat 4888.599 kb on - strandat 4888.599 kb on - strandat 4888.660 kb on + strandat 4888.667 kb on + strandat 4888.667 kb on + strandat 4888.667 kb on + strandat 4888.667 kb on + strandat 4888.667 kb on + strandat 4888.667 kb on + strandat 4888.668 kb on - strandat 4888.668 kb on - strandat 4888.668 kb on - strandat 4888.668 kb on - strandat 4888.668 kb on - strandat 4888.705 kb on + strandat 4888.706 kb on - strandat 4888.720 kb on + strandat 4888.720 kb on + strandat 4888.720 kb on + strandat 4888.720 kb on + strandat 4888.720 kb on + strandat 4888.720 kb on + strandat 4888.721 kb on - strandat 4888.721 kb on - strandat 4888.721 kb on - strandat 4888.721 kb on - strandat 4888.721 kb on - strandat 4888.816 kb on + strandat 4888.816 kb on + strandat 4888.816 kb on + strandat 4888.816 kb on + strandat 4888.838 kb on + strandat 4888.838 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.958 kb on + strandat 4888.959 kb on - strand, within AO353_22320at 4888.959 kb on - strand, within AO353_22320at 4888.960 kb on + strand, within AO353_22320at 4888.960 kb on + strand, within AO353_22320at 4888.960 kb on + strand, within AO353_22320at 4889.000 kb on + strand, within AO353_22320at 4889.000 kb on + strand, within AO353_22320at 4889.000 kb on + strand, within AO353_22320at 4889.000 kb on + strand, within AO353_22320at 4889.001 kb on - strand, within AO353_22320at 4889.001 kb on - strand, within AO353_22320at 4889.001 kb on - strand, within AO353_22320at 4889.037 kb on + strand, within AO353_22320at 4889.061 kb on + strand, within AO353_22320at 4889.062 kb on - strand, within AO353_22320at 4889.078 kb on + strand, within AO353_22320at 4889.078 kb on + strand, within AO353_22320at 4889.078 kb on + strand, within AO353_22320at 4889.079 kb on - strand, within AO353_22320at 4889.079 kb on - strand, within AO353_22320at 4889.079 kb on - strand, within AO353_22320at 4889.079 kb on - strand, within AO353_22320at 4889.081 kb on + strand, within AO353_22320at 4889.103 kb on + strand, within AO353_22320at 4889.104 kb on - strand, within AO353_22320at 4889.104 kb on - strand, within AO353_22320at 4889.257 kb on + strand, within AO353_22325at 4889.257 kb on + strand, within AO353_22325at 4889.257 kb on + strand, within AO353_22325at 4889.257 kb on + strand, within AO353_22325at 4889.257 kb on + strand, within AO353_22325at 4889.257 kb on + strand, within AO353_22325at 4889.258 kb on - strand, within AO353_22325at 4889.258 kb on - strand, within AO353_22325at 4889.258 kb on - strand, within AO353_22325at 4889.258 kb on - strand, within AO353_22325at 4889.258 kb on - strand, within AO353_22325at 4889.323 kb on + strand, within AO353_22325at 4889.324 kb on - strand, within AO353_22325at 4889.407 kb on - strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.431 kb on + strand, within AO353_22325at 4889.432 kb on - strand, within AO353_22325at 4889.432 kb on - strand, within AO353_22325at 4889.436 kb on + strand, within AO353_22325at 4889.611 kb on + strand, within AO353_22325at 4889.611 kb on + strand, within AO353_22325at 4889.611 kb on + strand, within AO353_22325at 4889.611 kb on + strand, within AO353_22325at 4889.612 kb on - strand, within AO353_22325at 4889.612 kb on - strand, within AO353_22325at 4889.612 kb on - strand, within AO353_22325at 4889.612 kb on - strand, within AO353_22325at 4889.612 kb on - strand, within AO353_22325at 4889.612 kb on - strand, within AO353_22325at 4889.612 kb on - strand, within AO353_22325at 4889.613 kb on + strand, within AO353_22325at 4889.643 kb on + strand, within AO353_22325at 4889.679 kb on + strand, within AO353_22325at 4889.680 kb on - strand, within AO353_22325at 4889.680 kb on - strand, within AO353_22325at 4889.775 kb on + strand, within AO353_22325at 4889.775 kb on + strand, within AO353_22325at 4889.776 kb on - strand, within AO353_22325at 4889.776 kb on - strand, within AO353_22325at 4889.776 kb on - strand, within AO353_22325at 4889.778 kb on + strand, within AO353_22325at 4889.779 kb on - strand, within AO353_22325at 4889.779 kb on - strand, within AO353_22325at 4889.896 kb on + strandat 4889.896 kb on + strandat 4889.923 kb on + strandat 4889.923 kb on + strandat 4889.963 kb on + strandat 4889.986 kb on + strandat 4889.986 kb on + strandat 4890.073 kb on + strand, within AO353_22330at 4890.073 kb on + strand, within AO353_22330at 4890.074 kb on - strand, within AO353_22330at 4890.111 kb on + strand, within AO353_22330at 4890.111 kb on + strand, within AO353_22330

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0016 mg/ml
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4,888,104 - AO353_22315 0.58 +1.3
4,888,241 + AO353_22315 0.70 +1.9
4,888,242 - AO353_22315 0.70 +1.6
4,888,378 + AO353_22315 0.81 +0.4
4,888,378 + AO353_22315 0.81 +0.4
4,888,379 - +2.0
4,888,379 - AO353_22315 0.81 -0.4
4,888,379 - AO353_22315 0.81 -1.4
4,888,446 + AO353_22315 0.87 -0.4
4,888,447 - AO353_22315 0.87 +1.4
4,888,459 + AO353_22315 0.88 +1.4
4,888,460 - AO353_22315 0.88 -1.4
4,888,484 + AO353_22315 0.90 -0.6
4,888,485 - +1.0
4,888,501 - +0.9
4,888,510 - +0.5
4,888,556 + -0.4
4,888,556 + -0.5
4,888,557 - +1.0
4,888,557 - -0.0
4,888,557 - +0.2
4,888,557 - +0.0
4,888,594 + -0.4
4,888,595 - +1.4
4,888,598 + -1.2
4,888,599 - +0.5
4,888,599 - +0.4
4,888,599 - -0.2
4,888,599 - -0.7
4,888,660 + -1.1
4,888,667 + -1.6
4,888,667 + +2.6
4,888,667 + -1.0
4,888,667 + -1.2
4,888,667 + -1.0
4,888,667 + -1.8
4,888,668 - -0.5
4,888,668 - -1.1
4,888,668 - +1.1
4,888,668 - -2.6
4,888,668 - +0.4
4,888,705 + +1.1
4,888,706 - +0.6
4,888,720 + -0.4
4,888,720 + +1.9
4,888,720 + +0.0
4,888,720 + +0.2
4,888,720 + +2.0
4,888,720 + +1.0
4,888,721 - -1.3
4,888,721 - -2.8
4,888,721 - -0.6
4,888,721 - -0.7
4,888,721 - -1.4
4,888,816 + -0.2
4,888,816 + -1.4
4,888,816 + +0.4
4,888,816 + -1.2
4,888,838 + -0.4
4,888,838 + +0.6
4,888,958 + -1.7
4,888,958 + -1.6
4,888,958 + -0.4
4,888,958 + +0.2
4,888,958 + +1.4
4,888,958 + +0.2
4,888,958 + +0.8
4,888,958 + +0.4
4,888,958 + -0.3
4,888,959 - AO353_22320 0.10 +1.6
4,888,959 - AO353_22320 0.10 -0.6
4,888,960 + AO353_22320 0.11 +0.5
4,888,960 + AO353_22320 0.11 -1.2
4,888,960 + AO353_22320 0.11 +1.0
4,889,000 + AO353_22320 0.32 -1.5
4,889,000 + AO353_22320 0.32 +0.3
4,889,000 + AO353_22320 0.32 -0.7
4,889,000 + AO353_22320 0.32 +0.7
4,889,001 - AO353_22320 0.33 +1.3
4,889,001 - AO353_22320 0.33 -0.7
4,889,001 - AO353_22320 0.33 -2.0
4,889,037 + AO353_22320 0.52 -0.6
4,889,061 + AO353_22320 0.65 -0.6
4,889,062 - AO353_22320 0.66 +0.4
4,889,078 + AO353_22320 0.74 +0.3
4,889,078 + AO353_22320 0.74 -1.7
4,889,078 + AO353_22320 0.74 +0.9
4,889,079 - AO353_22320 0.75 +0.4
4,889,079 - AO353_22320 0.75 -0.4
4,889,079 - AO353_22320 0.75 -0.8
4,889,079 - AO353_22320 0.75 +0.5
4,889,081 + AO353_22320 0.76 +0.6
4,889,103 + AO353_22320 0.88 +0.2
4,889,104 - AO353_22320 0.88 -0.7
4,889,104 - AO353_22320 0.88 +0.1
4,889,257 + AO353_22325 0.14 +0.3
4,889,257 + AO353_22325 0.14 -1.0
4,889,257 + AO353_22325 0.14 +0.2
4,889,257 + AO353_22325 0.14 -1.0
4,889,257 + AO353_22325 0.14 -1.7
4,889,257 + AO353_22325 0.14 +0.1
4,889,258 - AO353_22325 0.15 -0.4
4,889,258 - AO353_22325 0.15 -0.3
4,889,258 - AO353_22325 0.15 +0.4
4,889,258 - AO353_22325 0.15 -0.7
4,889,258 - AO353_22325 0.15 +0.7
4,889,323 + AO353_22325 0.23 -0.8
4,889,324 - AO353_22325 0.23 -0.7
4,889,407 - AO353_22325 0.34 +0.8
4,889,431 + AO353_22325 0.38 +1.0
4,889,431 + AO353_22325 0.38 +1.3
4,889,431 + AO353_22325 0.38 +0.4
4,889,431 + AO353_22325 0.38 -1.8
4,889,431 + AO353_22325 0.38 +1.2
4,889,431 + AO353_22325 0.38 +1.5
4,889,432 - AO353_22325 0.38 -0.7
4,889,432 - AO353_22325 0.38 +0.6
4,889,436 + AO353_22325 0.38 +0.0
4,889,611 + AO353_22325 0.62 -2.0
4,889,611 + AO353_22325 0.62 -0.1
4,889,611 + AO353_22325 0.62 +1.3
4,889,611 + AO353_22325 0.62 +0.6
4,889,612 - AO353_22325 0.62 +0.0
4,889,612 - AO353_22325 0.62 -0.4
4,889,612 - AO353_22325 0.62 +0.2
4,889,612 - AO353_22325 0.62 -0.6
4,889,612 - AO353_22325 0.62 +1.6
4,889,612 - AO353_22325 0.62 +0.6
4,889,612 - AO353_22325 0.62 -0.4
4,889,613 + AO353_22325 0.62 -0.4
4,889,643 + AO353_22325 0.66 -0.6
4,889,679 + AO353_22325 0.71 -0.2
4,889,680 - AO353_22325 0.71 -0.7
4,889,680 - AO353_22325 0.71 +0.7
4,889,775 + AO353_22325 0.83 -0.5
4,889,775 + AO353_22325 0.83 -0.7
4,889,776 - AO353_22325 0.84 +0.3
4,889,776 - AO353_22325 0.84 -0.7
4,889,776 - AO353_22325 0.84 -1.2
4,889,778 + AO353_22325 0.84 -0.3
4,889,779 - AO353_22325 0.84 -0.3
4,889,779 - AO353_22325 0.84 +2.6
4,889,896 + -1.7
4,889,896 + +1.2
4,889,923 + -0.4
4,889,923 + +1.9
4,889,963 + +0.0
4,889,986 + -1.0
4,889,986 + +0.2
4,890,073 + AO353_22330 0.19 -1.1
4,890,073 + AO353_22330 0.19 +0.3
4,890,074 - AO353_22330 0.19 -0.1
4,890,111 + AO353_22330 0.23 -2.4
4,890,111 + AO353_22330 0.23 +0.0

Or see this region's nucleotide sequence