Experiment: Tetracycline 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_16735 and AO353_16740 are separated by 66 nucleotides AO353_16740 and AO353_16745 overlap by 4 nucleotides AO353_16745 and AO353_16750 are separated by 130 nucleotides
AO353_16735: AO353_16735 - phage tail protein, at 3,709,653 to 3,711,149
_16735
AO353_16740: AO353_16740 - phage tail protein, at 3,711,216 to 3,711,563
_16740
AO353_16745: AO353_16745 - ArsR family transcriptional regulator, at 3,711,560 to 3,711,856
_16745
AO353_16750: AO353_16750 - phage tail protein, at 3,711,987 to 3,713,750
_16750
Position (kb)
3711
3712 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3710.697 kb on + strand, within AO353_16735 at 3710.697 kb on + strand, within AO353_16735 at 3710.697 kb on + strand, within AO353_16735 at 3710.697 kb on + strand, within AO353_16735 at 3710.698 kb on - strand, within AO353_16735 at 3710.698 kb on - strand, within AO353_16735 at 3710.698 kb on - strand, within AO353_16735 at 3710.715 kb on + strand, within AO353_16735 at 3710.715 kb on + strand, within AO353_16735 at 3710.718 kb on + strand, within AO353_16735 at 3710.718 kb on + strand, within AO353_16735 at 3710.718 kb on + strand, within AO353_16735 at 3710.719 kb on - strand, within AO353_16735 at 3710.719 kb on - strand, within AO353_16735 at 3710.719 kb on - strand, within AO353_16735 at 3710.719 kb on - strand, within AO353_16735 at 3710.719 kb on - strand, within AO353_16735 at 3710.719 kb on - strand, within AO353_16735 at 3710.719 kb on - strand, within AO353_16735 at 3710.719 kb on - strand, within AO353_16735 at 3710.761 kb on - strand, within AO353_16735 at 3710.775 kb on + strand, within AO353_16735 at 3710.796 kb on + strand, within AO353_16735 at 3710.796 kb on + strand, within AO353_16735 at 3710.797 kb on - strand, within AO353_16735 at 3710.797 kb on - strand, within AO353_16735 at 3710.797 kb on - strand, within AO353_16735 at 3710.797 kb on - strand, within AO353_16735 at 3710.797 kb on - strand, within AO353_16735 at 3710.868 kb on + strand, within AO353_16735 at 3710.868 kb on + strand, within AO353_16735 at 3710.868 kb on + strand, within AO353_16735 at 3710.869 kb on - strand, within AO353_16735 at 3710.869 kb on - strand, within AO353_16735 at 3710.964 kb on + strand, within AO353_16735 at 3711.081 kb on + strand at 3711.081 kb on + strand at 3711.081 kb on + strand at 3711.081 kb on + strand at 3711.081 kb on + strand at 3711.082 kb on - strand at 3711.082 kb on - strand at 3711.132 kb on + strand at 3711.133 kb on - strand at 3711.197 kb on + strand at 3711.198 kb on - strand at 3711.198 kb on - strand at 3711.198 kb on - strand at 3711.243 kb on + strand at 3711.243 kb on + strand at 3711.243 kb on + strand at 3711.243 kb on + strand at 3711.243 kb on + strand at 3711.243 kb on + strand at 3711.244 kb on - strand at 3711.244 kb on - strand at 3711.336 kb on + strand, within AO353_16740 at 3711.337 kb on - strand, within AO353_16740 at 3711.337 kb on - strand, within AO353_16740 at 3711.480 kb on + strand, within AO353_16740 at 3711.480 kb on + strand, within AO353_16740 at 3711.480 kb on + strand, within AO353_16740 at 3711.480 kb on + strand, within AO353_16740 at 3711.480 kb on + strand, within AO353_16740 at 3711.481 kb on - strand, within AO353_16740 at 3711.481 kb on - strand, within AO353_16740 at 3711.674 kb on + strand, within AO353_16745 at 3711.728 kb on + strand, within AO353_16745 at 3711.728 kb on + strand, within AO353_16745 at 3711.729 kb on - strand, within AO353_16745 at 3711.729 kb on - strand, within AO353_16745 at 3711.729 kb on - strand, within AO353_16745 at 3711.868 kb on + strand at 3711.869 kb on - strand at 3712.178 kb on + strand, within AO353_16750 at 3712.178 kb on + strand, within AO353_16750 at 3712.178 kb on + strand, within AO353_16750 at 3712.178 kb on + strand, within AO353_16750 at 3712.178 kb on + strand, within AO353_16750 at 3712.178 kb on + strand, within AO353_16750 at 3712.179 kb on - strand, within AO353_16750 at 3712.179 kb on - strand, within AO353_16750 at 3712.246 kb on + strand, within AO353_16750 at 3712.247 kb on - strand, within AO353_16750 at 3712.247 kb on - strand, within AO353_16750 at 3712.256 kb on - strand, within AO353_16750 at 3712.333 kb on + strand, within AO353_16750 at 3712.537 kb on + strand, within AO353_16750 at 3712.700 kb on + strand, within AO353_16750 at 3712.700 kb on + strand, within AO353_16750 at 3712.700 kb on + strand, within AO353_16750 at 3712.700 kb on + strand, within AO353_16750 at 3712.700 kb on + strand, within AO353_16750 at 3712.700 kb on + strand, within AO353_16750 at 3712.701 kb on - strand, within AO353_16750
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0016 mg/ml remove 3,710,697 + AO353_16735 0.70 -0.7 3,710,697 + AO353_16735 0.70 +2.1 3,710,697 + AO353_16735 0.70 +0.5 3,710,697 + AO353_16735 0.70 -0.2 3,710,698 - AO353_16735 0.70 -0.7 3,710,698 - AO353_16735 0.70 -0.5 3,710,698 - AO353_16735 0.70 +1.7 3,710,715 + AO353_16735 0.71 -0.2 3,710,715 + AO353_16735 0.71 +1.0 3,710,718 + AO353_16735 0.71 +0.7 3,710,718 + AO353_16735 0.71 -0.4 3,710,718 + AO353_16735 0.71 -0.2 3,710,719 - AO353_16735 0.71 -1.0 3,710,719 - AO353_16735 0.71 +1.7 3,710,719 - AO353_16735 0.71 +0.5 3,710,719 - AO353_16735 0.71 -1.4 3,710,719 - AO353_16735 0.71 +0.9 3,710,719 - AO353_16735 0.71 +1.1 3,710,719 - AO353_16735 0.71 -0.0 3,710,719 - AO353_16735 0.71 -1.3 3,710,761 - AO353_16735 0.74 +1.8 3,710,775 + AO353_16735 0.75 +1.2 3,710,796 + AO353_16735 0.76 +0.2 3,710,796 + AO353_16735 0.76 +1.0 3,710,797 - AO353_16735 0.76 -1.7 3,710,797 - AO353_16735 0.76 +0.5 3,710,797 - AO353_16735 0.76 -0.3 3,710,797 - AO353_16735 0.76 +0.5 3,710,797 - AO353_16735 0.76 -1.5 3,710,868 + AO353_16735 0.81 -0.5 3,710,868 + AO353_16735 0.81 -1.1 3,710,868 + AO353_16735 0.81 +1.9 3,710,869 - AO353_16735 0.81 -0.9 3,710,869 - AO353_16735 0.81 +0.6 3,710,964 + AO353_16735 0.88 +1.5 3,711,081 + +1.1 3,711,081 + -1.7 3,711,081 + -1.6 3,711,081 + +1.6 3,711,081 + -0.9 3,711,082 - +0.3 3,711,082 - -0.2 3,711,132 + +0.2 3,711,133 - -0.7 3,711,197 + +0.0 3,711,198 - +1.5 3,711,198 - +0.4 3,711,198 - +0.0 3,711,243 + +0.2 3,711,243 + -0.5 3,711,243 + -2.4 3,711,243 + +0.4 3,711,243 + -0.7 3,711,243 + +1.2 3,711,244 - -2.1 3,711,244 - +1.7 3,711,336 + AO353_16740 0.34 -1.2 3,711,337 - AO353_16740 0.35 -0.7 3,711,337 - AO353_16740 0.35 +1.3 3,711,480 + AO353_16740 0.76 -0.8 3,711,480 + AO353_16740 0.76 -0.0 3,711,480 + AO353_16740 0.76 -0.7 3,711,480 + AO353_16740 0.76 +0.4 3,711,480 + AO353_16740 0.76 -0.4 3,711,481 - AO353_16740 0.76 -0.9 3,711,481 - AO353_16740 0.76 -1.2 3,711,674 + AO353_16745 0.38 -0.4 3,711,728 + AO353_16745 0.57 -1.1 3,711,728 + AO353_16745 0.57 +1.8 3,711,729 - AO353_16745 0.57 -0.2 3,711,729 - AO353_16745 0.57 -1.3 3,711,729 - AO353_16745 0.57 -1.1 3,711,868 + -1.8 3,711,869 - -2.1 3,712,178 + AO353_16750 0.11 +1.6 3,712,178 + AO353_16750 0.11 -0.2 3,712,178 + AO353_16750 0.11 -2.0 3,712,178 + AO353_16750 0.11 -0.4 3,712,178 + AO353_16750 0.11 -0.7 3,712,178 + AO353_16750 0.11 +1.6 3,712,179 - AO353_16750 0.11 -2.3 3,712,179 - AO353_16750 0.11 -0.8 3,712,246 + AO353_16750 0.15 -1.1 3,712,247 - AO353_16750 0.15 -0.6 3,712,247 - AO353_16750 0.15 +1.4 3,712,256 - AO353_16750 0.15 -1.2 3,712,333 + AO353_16750 0.20 +1.0 3,712,537 + AO353_16750 0.31 +1.8 3,712,700 + AO353_16750 0.40 +0.3 3,712,700 + AO353_16750 0.40 +0.0 3,712,700 + AO353_16750 0.40 -1.5 3,712,700 + AO353_16750 0.40 -0.6 3,712,700 + AO353_16750 0.40 +0.7 3,712,700 + AO353_16750 0.40 -1.5 3,712,701 - AO353_16750 0.40 -0.0
Or see this region's nucleotide sequence