Experiment: Tetracycline 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04000 and AO353_04005 are separated by 100 nucleotides AO353_04005 and AO353_04010 are separated by 2 nucleotides AO353_04010 and AO353_04015 are separated by 125 nucleotides
AO353_04000: AO353_04000 - acriflavine resistance protein B, at 859,573 to 862,599
_04000
AO353_04005: AO353_04005 - hypothetical protein, at 862,700 to 862,930
_04005
AO353_04010: AO353_04010 - InaA protein, at 862,933 to 863,646
_04010
AO353_04015: AO353_04015 - histidine kinase, at 863,772 to 865,052
_04015
Position (kb) 862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 861.799 kb on + strand, within AO353_04000 at 861.799 kb on + strand, within AO353_04000 at 861.799 kb on + strand, within AO353_04000 at 861.799 kb on + strand, within AO353_04000 at 861.799 kb on + strand, within AO353_04000 at 861.800 kb on - strand, within AO353_04000 at 861.800 kb on - strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.859 kb on + strand, within AO353_04000 at 861.860 kb on - strand, within AO353_04000 at 861.860 kb on - strand, within AO353_04000 at 861.860 kb on - strand, within AO353_04000 at 861.860 kb on - strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.862 kb on + strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.863 kb on - strand, within AO353_04000 at 861.868 kb on - strand, within AO353_04000 at 862.054 kb on + strand, within AO353_04000 at 862.054 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.267 kb on + strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.268 kb on - strand, within AO353_04000 at 862.567 kb on + strand at 862.567 kb on + strand at 862.567 kb on + strand at 862.567 kb on + strand at 862.567 kb on + strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.568 kb on - strand at 862.597 kb on + strand at 862.597 kb on + strand at 862.598 kb on - strand at 862.601 kb on + strand at 862.601 kb on + strand at 862.602 kb on - strand at 862.602 kb on - strand at 862.789 kb on + strand, within AO353_04005 at 862.789 kb on + strand, within AO353_04005 at 862.843 kb on + strand, within AO353_04005 at 862.843 kb on + strand, within AO353_04005 at 862.843 kb on + strand, within AO353_04005 at 862.843 kb on + strand, within AO353_04005 at 862.843 kb on + strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.844 kb on - strand, within AO353_04005 at 862.904 kb on + strand, within AO353_04005 at 862.912 kb on + strand at 862.923 kb on - strand at 862.935 kb on - strand at 862.947 kb on + strand at 862.947 kb on + strand at 862.947 kb on + strand at 862.948 kb on - strand at 862.948 kb on - strand at 862.968 kb on + strand at 862.969 kb on - strand at 862.970 kb on + strand at 862.971 kb on - strand at 862.976 kb on + strand at 862.976 kb on + strand at 862.976 kb on + strand at 862.976 kb on + strand at 862.976 kb on + strand at 862.976 kb on + strand at 862.977 kb on - strand at 862.977 kb on - strand at 862.977 kb on - strand at 862.977 kb on - strand at 862.977 kb on - strand at 863.154 kb on + strand, within AO353_04010 at 863.154 kb on + strand, within AO353_04010 at 863.154 kb on + strand, within AO353_04010 at 863.154 kb on + strand, within AO353_04010 at 863.155 kb on - strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.156 kb on + strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.157 kb on - strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.166 kb on + strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.167 kb on - strand, within AO353_04010 at 863.271 kb on - strand, within AO353_04010 at 863.271 kb on - strand, within AO353_04010 at 863.271 kb on - strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.422 kb on + strand, within AO353_04010 at 863.423 kb on - strand, within AO353_04010 at 863.423 kb on - strand, within AO353_04010 at 863.423 kb on - strand, within AO353_04010 at 863.423 kb on - strand, within AO353_04010 at 863.458 kb on - strand, within AO353_04010 at 863.458 kb on - strand, within AO353_04010 at 863.462 kb on + strand, within AO353_04010 at 863.463 kb on - strand, within AO353_04010 at 863.463 kb on - strand, within AO353_04010 at 863.463 kb on - strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.466 kb on + strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.467 kb on - strand, within AO353_04010 at 863.476 kb on + strand, within AO353_04010 at 863.490 kb on - strand, within AO353_04010 at 863.490 kb on - strand, within AO353_04010 at 863.525 kb on - strand, within AO353_04010 at 863.525 kb on - strand, within AO353_04010 at 863.591 kb on + strand at 863.592 kb on - strand at 863.592 kb on - strand at 863.592 kb on - strand at 863.652 kb on + strand at 863.652 kb on + strand at 863.653 kb on - strand at 863.653 kb on - strand at 863.653 kb on - strand at 863.653 kb on - strand at 863.653 kb on - strand at 863.663 kb on + strand at 863.663 kb on + strand at 863.664 kb on - strand at 863.666 kb on + strand at 863.666 kb on + strand at 863.666 kb on + strand at 863.666 kb on + strand at 863.667 kb on - strand at 863.667 kb on - strand at 863.667 kb on - strand at 863.667 kb on - strand at 863.667 kb on - strand at 863.667 kb on - strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.668 kb on + strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.669 kb on - strand at 863.670 kb on + strand at 863.670 kb on + strand at 863.670 kb on + strand at 863.670 kb on + strand at 863.670 kb on + strand at 863.671 kb on - strand at 863.671 kb on - strand at 863.671 kb on - strand at 863.671 kb on - strand at 863.671 kb on - strand at 863.688 kb on + strand at 863.688 kb on + strand at 863.689 kb on - strand at 863.699 kb on - strand at 863.750 kb on + strand at 863.750 kb on + strand at 863.750 kb on + strand at 863.750 kb on + strand at 863.750 kb on + strand at 863.751 kb on - strand at 863.751 kb on - strand at 863.751 kb on - strand at 863.751 kb on - strand at 863.751 kb on - strand at 863.800 kb on + strand at 863.800 kb on + strand at 863.801 kb on - strand at 863.801 kb on - strand at 863.801 kb on - strand at 863.922 kb on + strand, within AO353_04015 at 863.922 kb on + strand, within AO353_04015 at 863.922 kb on + strand, within AO353_04015 at 863.923 kb on - strand, within AO353_04015
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0016 mg/ml remove 861,799 + AO353_04000 0.74 +2.6 861,799 + AO353_04000 0.74 -1.3 861,799 + AO353_04000 0.74 -2.3 861,799 + AO353_04000 0.74 -0.7 861,799 + AO353_04000 0.74 -2.2 861,800 - AO353_04000 0.74 -1.3 861,800 - AO353_04000 0.74 +0.0 861,859 + AO353_04000 0.76 +0.5 861,859 + AO353_04000 0.76 -0.9 861,859 + AO353_04000 0.76 -0.5 861,859 + AO353_04000 0.76 +0.9 861,859 + AO353_04000 0.76 -0.4 861,859 + AO353_04000 0.76 +0.3 861,859 + AO353_04000 0.76 -1.3 861,859 + AO353_04000 0.76 +0.7 861,859 + AO353_04000 0.76 -1.1 861,859 + AO353_04000 0.76 -1.1 861,859 + AO353_04000 0.76 +1.0 861,860 - AO353_04000 0.76 +1.1 861,860 - AO353_04000 0.76 -0.0 861,860 - AO353_04000 0.76 +0.0 861,860 - AO353_04000 0.76 -0.9 861,862 + AO353_04000 0.76 -3.0 861,862 + AO353_04000 0.76 +1.4 861,862 + AO353_04000 0.76 +1.2 861,862 + AO353_04000 0.76 +0.2 861,862 + AO353_04000 0.76 -1.6 861,862 + AO353_04000 0.76 -0.7 861,862 + AO353_04000 0.76 -1.3 861,862 + AO353_04000 0.76 -0.2 861,862 + AO353_04000 0.76 -1.3 861,863 - AO353_04000 0.76 -0.7 861,863 - AO353_04000 0.76 -0.6 861,863 - AO353_04000 0.76 -0.9 861,863 - AO353_04000 0.76 +0.4 861,863 - AO353_04000 0.76 -2.0 861,863 - AO353_04000 0.76 +1.3 861,863 - AO353_04000 0.76 -0.8 861,863 - AO353_04000 0.76 +1.8 861,863 - AO353_04000 0.76 +2.0 861,863 - AO353_04000 0.76 +0.0 861,863 - AO353_04000 0.76 +0.6 861,863 - AO353_04000 0.76 +1.1 861,863 - AO353_04000 0.76 -1.2 861,868 - AO353_04000 0.76 -1.7 862,054 + AO353_04000 0.82 -1.1 862,054 + AO353_04000 0.82 -1.1 862,267 + AO353_04000 0.89 +0.6 862,267 + AO353_04000 0.89 -1.3 862,267 + AO353_04000 0.89 +2.0 862,267 + AO353_04000 0.89 -0.3 862,267 + AO353_04000 0.89 -1.1 862,267 + AO353_04000 0.89 +0.7 862,267 + AO353_04000 0.89 -1.1 862,267 + AO353_04000 0.89 -0.8 862,267 + AO353_04000 0.89 -1.0 862,268 - AO353_04000 0.89 +0.6 862,268 - AO353_04000 0.89 +1.6 862,268 - AO353_04000 0.89 -0.5 862,268 - AO353_04000 0.89 -1.4 862,268 - AO353_04000 0.89 +1.2 862,268 - AO353_04000 0.89 -1.0 862,268 - AO353_04000 0.89 -0.2 862,567 + +0.7 862,567 + +0.5 862,567 + +0.8 862,567 + -0.1 862,567 + -0.8 862,568 - +1.5 862,568 - -1.1 862,568 - +0.8 862,568 - -2.7 862,568 - -1.0 862,568 - +1.5 862,568 - +0.6 862,597 + +0.6 862,597 + -0.7 862,598 - +0.5 862,601 + +0.0 862,601 + -0.1 862,602 - +0.7 862,602 - +0.2 862,789 + AO353_04005 0.39 +0.1 862,789 + AO353_04005 0.39 +0.1 862,843 + AO353_04005 0.62 -0.5 862,843 + AO353_04005 0.62 +0.8 862,843 + AO353_04005 0.62 -0.3 862,843 + AO353_04005 0.62 -1.1 862,843 + AO353_04005 0.62 -0.5 862,844 - AO353_04005 0.62 -1.7 862,844 - AO353_04005 0.62 +0.3 862,844 - AO353_04005 0.62 -0.3 862,844 - AO353_04005 0.62 -0.4 862,844 - AO353_04005 0.62 -1.0 862,844 - AO353_04005 0.62 -1.3 862,844 - AO353_04005 0.62 +0.2 862,904 + AO353_04005 0.88 -1.0 862,912 + -1.5 862,923 - -1.5 862,935 - -1.0 862,947 + -0.4 862,947 + -0.3 862,947 + +0.7 862,948 - +0.5 862,948 - +0.5 862,968 + +0.8 862,969 - -1.7 862,970 + -0.3 862,971 - -0.8 862,976 + -1.1 862,976 + -0.8 862,976 + +1.6 862,976 + -0.3 862,976 + +0.1 862,976 + +0.9 862,977 - +0.3 862,977 - +0.6 862,977 - -0.9 862,977 - +0.8 862,977 - -0.5 863,154 + AO353_04010 0.31 +1.8 863,154 + AO353_04010 0.31 +1.5 863,154 + AO353_04010 0.31 -0.7 863,154 + AO353_04010 0.31 -0.9 863,155 - AO353_04010 0.31 +1.2 863,156 + AO353_04010 0.31 +1.6 863,156 + AO353_04010 0.31 +2.4 863,156 + AO353_04010 0.31 +1.3 863,156 + AO353_04010 0.31 +0.4 863,156 + AO353_04010 0.31 +0.7 863,156 + AO353_04010 0.31 +1.4 863,156 + AO353_04010 0.31 -0.0 863,156 + AO353_04010 0.31 +1.2 863,156 + AO353_04010 0.31 -0.1 863,157 - AO353_04010 0.31 -1.8 863,157 - AO353_04010 0.31 -0.3 863,157 - AO353_04010 0.31 +1.6 863,157 - AO353_04010 0.31 +0.3 863,157 - AO353_04010 0.31 +0.3 863,157 - AO353_04010 0.31 +0.8 863,157 - +0.5 863,157 - AO353_04010 0.31 -0.7 863,157 - AO353_04010 0.31 -0.4 863,157 - AO353_04010 0.31 +0.0 863,157 - AO353_04010 0.31 -0.8 863,157 - AO353_04010 0.31 +1.0 863,166 + AO353_04010 0.33 -1.1 863,166 + AO353_04010 0.33 +0.5 863,166 + AO353_04010 0.33 +1.8 863,166 + AO353_04010 0.33 -0.5 863,166 + AO353_04010 0.33 +1.3 863,166 + AO353_04010 0.33 -0.4 863,166 + AO353_04010 0.33 +0.5 863,166 + AO353_04010 0.33 +0.5 863,166 + AO353_04010 0.33 +0.8 863,167 - AO353_04010 0.33 -0.5 863,167 - AO353_04010 0.33 -0.1 863,167 - AO353_04010 0.33 -0.8 863,167 - AO353_04010 0.33 +0.6 863,167 - AO353_04010 0.33 -2.1 863,167 - AO353_04010 0.33 +1.0 863,271 - AO353_04010 0.47 +1.0 863,271 - AO353_04010 0.47 +0.5 863,271 - AO353_04010 0.47 -0.5 863,422 + AO353_04010 0.68 +0.5 863,422 + AO353_04010 0.68 +0.2 863,422 + AO353_04010 0.68 +1.6 863,422 + AO353_04010 0.68 +0.3 863,422 + AO353_04010 0.68 +0.9 863,422 + AO353_04010 0.68 -0.3 863,423 - AO353_04010 0.69 +1.2 863,423 - AO353_04010 0.69 -1.4 863,423 - AO353_04010 0.69 -0.3 863,423 - AO353_04010 0.69 +1.3 863,458 - AO353_04010 0.74 -1.0 863,458 - AO353_04010 0.74 -2.4 863,462 + AO353_04010 0.74 -0.8 863,463 - AO353_04010 0.74 +0.5 863,463 - AO353_04010 0.74 +0.1 863,463 - AO353_04010 0.74 -2.2 863,466 + AO353_04010 0.75 +0.5 863,466 + AO353_04010 0.75 +1.6 863,466 + AO353_04010 0.75 -0.8 863,466 + AO353_04010 0.75 +0.2 863,466 + AO353_04010 0.75 +0.2 863,466 + AO353_04010 0.75 -1.7 863,466 + AO353_04010 0.75 +0.3 863,467 - AO353_04010 0.75 +1.8 863,467 - AO353_04010 0.75 -1.4 863,467 - AO353_04010 0.75 +0.3 863,467 - AO353_04010 0.75 +0.3 863,467 - AO353_04010 0.75 -1.3 863,467 - AO353_04010 0.75 -0.3 863,467 - AO353_04010 0.75 -2.1 863,476 + AO353_04010 0.76 +1.4 863,490 - AO353_04010 0.78 +0.3 863,490 - AO353_04010 0.78 -0.1 863,525 - AO353_04010 0.83 +1.3 863,525 - AO353_04010 0.83 -0.8 863,591 + +0.6 863,592 - -0.5 863,592 - -0.8 863,592 - -1.4 863,652 + -1.9 863,652 + -2.6 863,653 - +0.9 863,653 - +1.6 863,653 - -0.1 863,653 - +0.5 863,653 - -1.3 863,663 + -0.6 863,663 + +0.0 863,664 - -1.7 863,666 + -0.6 863,666 + +1.6 863,666 + -0.1 863,666 + -0.8 863,667 - +0.0 863,667 - -1.3 863,667 - -1.0 863,667 - -1.1 863,667 - -1.0 863,667 - +3.0 863,668 + -0.5 863,668 + +1.3 863,668 + -1.4 863,668 + -0.3 863,668 + +1.0 863,668 + +0.9 863,668 + -1.9 863,668 + -2.0 863,669 - +0.2 863,669 - +0.5 863,669 - -1.0 863,669 - +0.4 863,669 - -0.1 863,669 - -0.4 863,669 - -0.5 863,669 - -0.7 863,669 - -1.0 863,669 - +0.6 863,669 - -2.0 863,670 + +0.3 863,670 + +0.2 863,670 + +0.0 863,670 + -1.7 863,670 + +0.2 863,671 - +0.0 863,671 - -0.7 863,671 - -0.3 863,671 - -1.0 863,671 - +0.0 863,688 + +1.1 863,688 + +1.4 863,689 - -0.5 863,699 - +1.8 863,750 + +1.0 863,750 + -0.1 863,750 + +0.5 863,750 + -0.8 863,750 + +2.6 863,751 - +0.9 863,751 - -1.8 863,751 - -0.5 863,751 - +0.6 863,751 - +0.9 863,800 + +0.7 863,800 + -1.5 863,801 - +0.3 863,801 - -0.8 863,801 - -0.3 863,922 + AO353_04015 0.12 -1.4 863,922 + AO353_04015 0.12 -0.4 863,922 + AO353_04015 0.12 -0.5 863,923 - AO353_04015 0.12 -1.3
Or see this region's nucleotide sequence