Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03805

Experiment: Tetracycline 0.0016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_03800 and AO353_03805 overlap by 7 nucleotidesAO353_03805 and AO353_03810 are separated by 206 nucleotides AO353_03800: AO353_03800 - cytochrome C biogenesis protein CcmE, at 812,210 to 813,976 _03800 AO353_03805: AO353_03805 - C4-dicarboxylate ABC transporter, at 813,970 to 815,295 _03805 AO353_03810: AO353_03810 - Alpha-ketoglutarate permease, MFS superfamily (from data), at 815,502 to 816,821 _03810 Position (kb) 813 814 815 816Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.984 kb on + strand, within AO353_03800at 812.985 kb on - strand, within AO353_03800at 812.985 kb on - strand, within AO353_03800at 812.985 kb on - strand, within AO353_03800at 812.985 kb on - strand, within AO353_03800at 812.985 kb on - strand, within AO353_03800at 813.023 kb on + strand, within AO353_03800at 813.023 kb on + strand, within AO353_03800at 813.023 kb on + strand, within AO353_03800at 813.024 kb on - strand, within AO353_03800at 813.024 kb on - strand, within AO353_03800at 813.024 kb on - strand, within AO353_03800at 813.024 kb on - strand, within AO353_03800at 813.413 kb on + strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.414 kb on - strand, within AO353_03800at 813.415 kb on + strand, within AO353_03800at 813.416 kb on - strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.555 kb on + strand, within AO353_03800at 813.556 kb on - strand, within AO353_03800at 813.556 kb on - strand, within AO353_03800at 813.741 kb on + strand, within AO353_03800at 813.741 kb on + strand, within AO353_03800at 813.741 kb on + strand, within AO353_03800at 813.741 kb on + strand, within AO353_03800at 813.741 kb on + strand, within AO353_03800at 813.742 kb on - strand, within AO353_03800at 813.742 kb on - strand, within AO353_03800at 814.008 kb on + strandat 814.008 kb on + strandat 814.008 kb on + strandat 814.008 kb on + strandat 814.009 kb on - strandat 814.009 kb on - strandat 814.009 kb on - strandat 814.607 kb on + strand, within AO353_03805at 814.608 kb on - strand, within AO353_03805at 814.669 kb on + strand, within AO353_03805at 814.670 kb on - strand, within AO353_03805at 814.796 kb on + strand, within AO353_03805at 814.797 kb on - strand, within AO353_03805at 814.797 kb on - strand, within AO353_03805at 814.797 kb on - strand, within AO353_03805at 814.797 kb on - strand, within AO353_03805at 815.293 kb on + strandat 815.293 kb on + strandat 815.358 kb on + strandat 815.359 kb on - strandat 815.359 kb on - strandat 815.405 kb on + strandat 815.440 kb on + strandat 815.440 kb on + strandat 815.440 kb on + strandat 815.440 kb on + strandat 815.441 kb on - strandat 815.441 kb on - strandat 815.441 kb on - strandat 815.441 kb on - strandat 815.442 kb on + strandat 815.442 kb on + strandat 815.442 kb on + strandat 815.443 kb on - strandat 815.443 kb on - strandat 815.485 kb on + strandat 815.485 kb on + strandat 815.485 kb on + strandat 815.485 kb on + strandat 815.485 kb on + strandat 815.486 kb on - strandat 815.486 kb on - strandat 815.486 kb on - strandat 815.486 kb on - strandat 815.507 kb on + strandat 815.619 kb on + strandat 815.619 kb on + strandat 815.628 kb on + strandat 815.628 kb on + strandat 815.628 kb on + strandat 815.628 kb on + strandat 815.628 kb on + strandat 815.628 kb on + strandat 815.628 kb on + strandat 815.628 kb on + strandat 815.628 kb on + strandat 815.628 kb on + strandat 815.628 kb on + strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.629 kb on - strandat 815.634 kb on + strand, within AO353_03810at 815.634 kb on + strand, within AO353_03810at 815.635 kb on - strand, within AO353_03810at 815.652 kb on + strand, within AO353_03810at 815.652 kb on + strand, within AO353_03810at 815.652 kb on + strand, within AO353_03810at 815.653 kb on - strand, within AO353_03810at 815.653 kb on - strand, within AO353_03810at 815.653 kb on - strand, within AO353_03810at 815.653 kb on - strand, within AO353_03810at 815.769 kb on + strand, within AO353_03810at 815.769 kb on + strand, within AO353_03810at 815.769 kb on + strand, within AO353_03810at 815.770 kb on - strand, within AO353_03810at 815.770 kb on - strand, within AO353_03810at 815.770 kb on - strand, within AO353_03810at 815.770 kb on - strand, within AO353_03810at 815.770 kb on - strand, within AO353_03810at 815.770 kb on - strand, within AO353_03810at 815.789 kb on + strand, within AO353_03810at 815.790 kb on - strand, within AO353_03810at 815.790 kb on - strand, within AO353_03810at 815.815 kb on - strand, within AO353_03810at 815.815 kb on - strand, within AO353_03810at 815.937 kb on + strand, within AO353_03810at 815.938 kb on - strand, within AO353_03810at 815.955 kb on + strand, within AO353_03810at 815.955 kb on + strand, within AO353_03810at 815.955 kb on + strand, within AO353_03810at 815.955 kb on + strand, within AO353_03810at 815.956 kb on - strand, within AO353_03810at 815.956 kb on - strand, within AO353_03810at 815.956 kb on - strand, within AO353_03810at 815.956 kb on - strand, within AO353_03810at 815.956 kb on - strand, within AO353_03810at 815.956 kb on - strand, within AO353_03810at 815.956 kb on - strand, within AO353_03810at 815.956 kb on - strand, within AO353_03810at 816.009 kb on + strand, within AO353_03810at 816.009 kb on + strand, within AO353_03810at 816.090 kb on + strand, within AO353_03810at 816.090 kb on + strand, within AO353_03810at 816.090 kb on + strand, within AO353_03810at 816.091 kb on - strand, within AO353_03810at 816.091 kb on - strand, within AO353_03810at 816.091 kb on - strand, within AO353_03810at 816.091 kb on - strand, within AO353_03810at 816.091 kb on - strand, within AO353_03810at 816.150 kb on + strand, within AO353_03810at 816.150 kb on + strand, within AO353_03810at 816.150 kb on + strand, within AO353_03810at 816.151 kb on - strand, within AO353_03810at 816.151 kb on - strand, within AO353_03810at 816.151 kb on - strand, within AO353_03810at 816.291 kb on + strandat 816.291 kb on + strand, within AO353_03810at 816.291 kb on + strand, within AO353_03810at 816.291 kb on + strand, within AO353_03810at 816.291 kb on + strand, within AO353_03810at 816.291 kb on + strand, within AO353_03810at 816.291 kb on + strand, within AO353_03810at 816.292 kb on - strand, within AO353_03810at 816.292 kb on - strand, within AO353_03810at 816.292 kb on - strand, within AO353_03810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0016 mg/ml
remove
812,984 + AO353_03800 0.44 +0.3
812,984 + AO353_03800 0.44 +1.7
812,984 + AO353_03800 0.44 +0.3
812,984 + AO353_03800 0.44 -0.3
812,984 + AO353_03800 0.44 -1.0
812,984 + AO353_03800 0.44 -0.3
812,984 + AO353_03800 0.44 +2.0
812,985 - AO353_03800 0.44 +0.4
812,985 - AO353_03800 0.44 +1.0
812,985 - AO353_03800 0.44 +0.3
812,985 - AO353_03800 0.44 -1.0
812,985 - AO353_03800 0.44 +0.5
813,023 + AO353_03800 0.46 -0.8
813,023 + AO353_03800 0.46 -1.9
813,023 + AO353_03800 0.46 -1.9
813,024 - AO353_03800 0.46 -0.5
813,024 - AO353_03800 0.46 +0.8
813,024 - AO353_03800 0.46 -1.2
813,024 - AO353_03800 0.46 +1.1
813,413 + AO353_03800 0.68 -0.6
813,414 - AO353_03800 0.68 -0.9
813,414 - AO353_03800 0.68 -1.5
813,414 - AO353_03800 0.68 +0.6
813,414 - AO353_03800 0.68 +0.2
813,414 - AO353_03800 0.68 +0.4
813,414 - AO353_03800 0.68 +0.4
813,414 - AO353_03800 0.68 -0.8
813,415 + AO353_03800 0.68 -0.5
813,416 - AO353_03800 0.68 +0.2
813,555 + AO353_03800 0.76 +0.4
813,555 + AO353_03800 0.76 +0.1
813,555 + AO353_03800 0.76 +0.2
813,555 + AO353_03800 0.76 +0.1
813,555 + AO353_03800 0.76 +0.0
813,555 + AO353_03800 0.76 +0.4
813,556 - AO353_03800 0.76 -0.8
813,556 - AO353_03800 0.76 -0.1
813,741 + AO353_03800 0.87 +1.6
813,741 + AO353_03800 0.87 +0.8
813,741 + AO353_03800 0.87 +0.0
813,741 + AO353_03800 0.87 -1.0
813,741 + AO353_03800 0.87 +0.2
813,742 - AO353_03800 0.87 +0.8
813,742 - AO353_03800 0.87 +1.6
814,008 + +1.4
814,008 + -0.6
814,008 + +1.1
814,008 + -0.3
814,009 - +1.6
814,009 - +1.2
814,009 - -0.6
814,607 + AO353_03805 0.48 +0.7
814,608 - AO353_03805 0.48 -1.6
814,669 + AO353_03805 0.53 -0.6
814,670 - AO353_03805 0.53 +0.6
814,796 + AO353_03805 0.62 -1.0
814,797 - AO353_03805 0.62 -0.5
814,797 - AO353_03805 0.62 -0.3
814,797 - AO353_03805 0.62 +0.8
814,797 - AO353_03805 0.62 -1.0
815,293 + +1.3
815,293 + +0.8
815,358 + -1.2
815,359 - +1.0
815,359 - +1.4
815,405 + -1.4
815,440 + -0.8
815,440 + -0.8
815,440 + +0.6
815,440 + -1.0
815,441 - -1.8
815,441 - -1.4
815,441 - -1.0
815,441 - -1.3
815,442 + +0.6
815,442 + +0.2
815,442 + -0.8
815,443 - -0.6
815,443 - -1.4
815,485 + -1.4
815,485 + +1.0
815,485 + +0.2
815,485 + +0.0
815,485 + -0.2
815,486 - -1.6
815,486 - +2.9
815,486 - -0.3
815,486 - -1.3
815,507 + -0.2
815,619 + -1.1
815,619 + +1.4
815,628 + +0.6
815,628 + +1.2
815,628 + +0.3
815,628 + +0.8
815,628 + +2.5
815,628 + -0.6
815,628 + +0.4
815,628 + +0.9
815,628 + -0.3
815,628 + +0.5
815,628 + -1.2
815,629 - -0.6
815,629 - +0.7
815,629 - -0.6
815,629 - -0.1
815,629 - +0.0
815,629 - +0.5
815,629 - +0.2
815,629 - -0.1
815,629 - +2.5
815,629 - -1.7
815,629 - +0.7
815,629 - +1.6
815,629 - +1.8
815,629 - -1.9
815,629 - -0.8
815,634 + AO353_03810 0.10 +0.6
815,634 + AO353_03810 0.10 +0.4
815,635 - AO353_03810 0.10 -1.2
815,652 + AO353_03810 0.11 +0.7
815,652 + AO353_03810 0.11 +0.7
815,652 + AO353_03810 0.11 +0.6
815,653 - AO353_03810 0.11 +0.1
815,653 - AO353_03810 0.11 +1.7
815,653 - AO353_03810 0.11 +0.5
815,653 - AO353_03810 0.11 -0.5
815,769 + AO353_03810 0.20 -1.3
815,769 + AO353_03810 0.20 -0.7
815,769 + AO353_03810 0.20 +0.7
815,770 - AO353_03810 0.20 -0.1
815,770 - AO353_03810 0.20 -1.4
815,770 - AO353_03810 0.20 -0.3
815,770 - AO353_03810 0.20 -1.6
815,770 - AO353_03810 0.20 +0.0
815,770 - AO353_03810 0.20 +0.1
815,789 + AO353_03810 0.22 +0.9
815,790 - AO353_03810 0.22 +0.8
815,790 - AO353_03810 0.22 -0.3
815,815 - AO353_03810 0.24 -0.3
815,815 - AO353_03810 0.24 +0.7
815,937 + AO353_03810 0.33 -0.3
815,938 - AO353_03810 0.33 +0.2
815,955 + AO353_03810 0.34 -1.1
815,955 + AO353_03810 0.34 +0.7
815,955 + AO353_03810 0.34 +0.7
815,955 + AO353_03810 0.34 -0.3
815,956 - AO353_03810 0.34 +0.1
815,956 - AO353_03810 0.34 +0.8
815,956 - AO353_03810 0.34 -1.4
815,956 - AO353_03810 0.34 -1.2
815,956 - AO353_03810 0.34 +0.5
815,956 - AO353_03810 0.34 -1.2
815,956 - AO353_03810 0.34 -0.5
815,956 - AO353_03810 0.34 +0.3
816,009 + AO353_03810 0.38 -0.3
816,009 + AO353_03810 0.38 +0.3
816,090 + AO353_03810 0.45 -1.4
816,090 + AO353_03810 0.45 -0.6
816,090 + AO353_03810 0.45 +0.0
816,091 - AO353_03810 0.45 -1.0
816,091 - AO353_03810 0.45 +2.5
816,091 - AO353_03810 0.45 -1.2
816,091 - AO353_03810 0.45 -0.6
816,091 - AO353_03810 0.45 -0.4
816,150 + AO353_03810 0.49 -1.0
816,150 + AO353_03810 0.49 -0.1
816,150 + AO353_03810 0.49 -0.9
816,151 - AO353_03810 0.49 -2.8
816,151 - AO353_03810 0.49 +1.9
816,151 - AO353_03810 0.49 +0.0
816,291 + +1.0
816,291 + AO353_03810 0.60 -1.0
816,291 + AO353_03810 0.60 +0.1
816,291 + AO353_03810 0.60 +0.8
816,291 + AO353_03810 0.60 -0.4
816,291 + AO353_03810 0.60 +0.0
816,291 + AO353_03810 0.60 -1.7
816,292 - AO353_03810 0.60 -1.0
816,292 - AO353_03810 0.60 +2.0
816,292 - AO353_03810 0.60 +1.5

Or see this region's nucleotide sequence