Experiment: Tetracycline 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03790 and AO353_03795 are separated by 491 nucleotides AO353_03795 and AO353_03800 are separated by 156 nucleotides
AO353_03790: AO353_03790 - hypothetical protein, at 808,932 to 810,038
_03790
AO353_03795: AO353_03795 - fumarate hydratase, at 810,530 to 812,053
_03795
AO353_03800: AO353_03800 - cytochrome C biogenesis protein CcmE, at 812,210 to 813,976
_03800
Position (kb) 810
811
812
813 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 809.536 kb on + strand, within AO353_03790 at 809.536 kb on + strand, within AO353_03790 at 809.536 kb on + strand, within AO353_03790 at 809.536 kb on + strand, within AO353_03790 at 809.537 kb on - strand, within AO353_03790 at 809.537 kb on - strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.561 kb on + strand, within AO353_03790 at 809.725 kb on + strand, within AO353_03790 at 809.725 kb on + strand, within AO353_03790 at 809.725 kb on + strand, within AO353_03790 at 809.725 kb on + strand, within AO353_03790 at 809.726 kb on - strand, within AO353_03790 at 809.726 kb on - strand, within AO353_03790 at 809.883 kb on + strand, within AO353_03790 at 809.883 kb on + strand, within AO353_03790 at 809.884 kb on - strand, within AO353_03790 at 809.884 kb on - strand, within AO353_03790 at 809.884 kb on - strand, within AO353_03790 at 809.929 kb on + strand at 809.930 kb on - strand at 809.930 kb on - strand at 809.965 kb on - strand at 809.965 kb on - strand at 809.965 kb on - strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.978 kb on - strand at 809.978 kb on - strand at 809.978 kb on - strand at 809.978 kb on - strand at 809.978 kb on - strand at 809.996 kb on + strand at 809.997 kb on - strand at 810.070 kb on + strand at 810.070 kb on + strand at 810.070 kb on + strand at 810.081 kb on + strand at 810.106 kb on + strand at 810.106 kb on + strand at 810.148 kb on - strand at 810.148 kb on - strand at 810.273 kb on + strand at 810.273 kb on + strand at 810.274 kb on - strand at 810.274 kb on - strand at 810.400 kb on + strand at 810.402 kb on + strand at 810.402 kb on + strand at 810.403 kb on - strand at 810.494 kb on + strand at 810.494 kb on + strand at 810.494 kb on + strand at 810.494 kb on + strand at 810.495 kb on - strand at 810.514 kb on + strand at 810.515 kb on - strand at 810.593 kb on + strand at 810.596 kb on + strand at 810.596 kb on + strand at 810.763 kb on - strand, within AO353_03795 at 810.763 kb on - strand, within AO353_03795 at 810.766 kb on + strand, within AO353_03795 at 810.767 kb on - strand, within AO353_03795 at 810.767 kb on - strand, within AO353_03795 at 810.767 kb on - strand, within AO353_03795 at 811.550 kb on - strand, within AO353_03795 at 811.647 kb on - strand, within AO353_03795 at 811.647 kb on - strand, within AO353_03795 at 811.647 kb on - strand, within AO353_03795 at 811.650 kb on - strand, within AO353_03795 at 811.829 kb on + strand, within AO353_03795 at 811.830 kb on - strand, within AO353_03795 at 811.856 kb on + strand, within AO353_03795 at 811.856 kb on + strand, within AO353_03795 at 811.857 kb on - strand, within AO353_03795 at 811.925 kb on + strand at 811.926 kb on - strand at 812.040 kb on + strand at 812.040 kb on + strand at 812.040 kb on + strand at 812.040 kb on + strand at 812.041 kb on - strand at 812.041 kb on - strand at 812.041 kb on - strand at 812.051 kb on + strand at 812.051 kb on + strand at 812.051 kb on + strand at 812.051 kb on + strand at 812.051 kb on + strand at 812.051 kb on + strand at 812.052 kb on - strand at 812.052 kb on - strand at 812.052 kb on - strand at 812.052 kb on - strand at 812.052 kb on - strand at 812.172 kb on + strand at 812.172 kb on + strand at 812.172 kb on + strand at 812.172 kb on + strand at 812.172 kb on + strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.188 kb on - strand at 812.204 kb on + strand at 812.205 kb on - strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.249 kb on - strand at 812.249 kb on - strand at 812.361 kb on - strand at 812.421 kb on + strand, within AO353_03800 at 812.488 kb on + strand, within AO353_03800 at 812.488 kb on + strand, within AO353_03800 at 812.488 kb on + strand, within AO353_03800 at 812.591 kb on + strand, within AO353_03800 at 812.591 kb on + strand, within AO353_03800 at 812.591 kb on + strand, within AO353_03800 at 812.592 kb on - strand, within AO353_03800 at 812.592 kb on - strand, within AO353_03800 at 812.592 kb on - strand, within AO353_03800 at 812.592 kb on - strand, within AO353_03800 at 812.606 kb on + strand, within AO353_03800 at 812.606 kb on + strand, within AO353_03800 at 812.607 kb on - strand, within AO353_03800 at 812.607 kb on - strand, within AO353_03800 at 812.621 kb on + strand, within AO353_03800 at 812.622 kb on - strand, within AO353_03800 at 812.660 kb on + strand, within AO353_03800 at 812.829 kb on + strand, within AO353_03800 at 812.829 kb on + strand, within AO353_03800 at 812.829 kb on + strand, within AO353_03800 at 812.829 kb on + strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.837 kb on - strand, within AO353_03800 at 812.921 kb on + strand, within AO353_03800 at 812.922 kb on - strand, within AO353_03800 at 812.922 kb on - strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.985 kb on - strand, within AO353_03800 at 812.985 kb on - strand, within AO353_03800 at 812.985 kb on - strand, within AO353_03800 at 812.985 kb on - strand, within AO353_03800 at 812.985 kb on - strand, within AO353_03800 at 813.023 kb on + strand, within AO353_03800 at 813.023 kb on + strand, within AO353_03800 at 813.023 kb on + strand, within AO353_03800 at 813.024 kb on - strand, within AO353_03800 at 813.024 kb on - strand, within AO353_03800 at 813.024 kb on - strand, within AO353_03800 at 813.024 kb on - strand, within AO353_03800
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0016 mg/ml remove 809,536 + AO353_03790 0.55 +0.4 809,536 + AO353_03790 0.55 +0.4 809,536 + AO353_03790 0.55 -1.0 809,536 + AO353_03790 0.55 +0.6 809,537 - AO353_03790 0.55 +0.4 809,537 - AO353_03790 0.55 -0.2 809,538 + AO353_03790 0.55 -0.9 809,538 + AO353_03790 0.55 -2.1 809,538 + AO353_03790 0.55 +0.2 809,538 + AO353_03790 0.55 +0.5 809,538 + AO353_03790 0.55 -2.1 809,538 + AO353_03790 0.55 +0.5 809,538 + AO353_03790 0.55 +4.2 809,538 + AO353_03790 0.55 +1.1 809,539 - AO353_03790 0.55 +0.5 809,539 - AO353_03790 0.55 -0.0 809,539 - AO353_03790 0.55 -0.0 809,539 - AO353_03790 0.55 -1.3 809,539 - AO353_03790 0.55 -0.8 809,539 - +1.0 809,539 - AO353_03790 0.55 -0.2 809,539 - AO353_03790 0.55 -0.3 809,539 - AO353_03790 0.55 -0.9 809,561 + AO353_03790 0.57 +0.4 809,725 + AO353_03790 0.72 -0.6 809,725 + AO353_03790 0.72 -0.7 809,725 + AO353_03790 0.72 -0.7 809,725 + AO353_03790 0.72 +0.4 809,726 - AO353_03790 0.72 -1.2 809,726 - AO353_03790 0.72 -0.4 809,883 + AO353_03790 0.86 +1.1 809,883 + AO353_03790 0.86 +0.5 809,884 - AO353_03790 0.86 -0.0 809,884 - AO353_03790 0.86 -0.3 809,884 - AO353_03790 0.86 +0.3 809,929 + -0.9 809,930 - +1.1 809,930 - +1.0 809,965 - -0.8 809,965 - -0.0 809,965 - -1.2 809,977 + +1.3 809,977 + +0.3 809,977 + -1.3 809,977 + +1.0 809,977 + +0.3 809,977 + -2.2 809,977 + -0.3 809,977 + -0.6 809,977 + +1.6 809,978 - +1.0 809,978 - -1.2 809,978 - +1.5 809,978 - +1.3 809,978 - -1.8 809,996 + -0.3 809,997 - -1.3 810,070 + -0.7 810,070 + -0.7 810,070 + -0.3 810,081 + -0.4 810,106 + +1.4 810,106 + +1.0 810,148 - -0.0 810,148 - -1.3 810,273 + +0.8 810,273 + -0.3 810,274 - +2.3 810,274 - -0.0 810,400 + -0.6 810,402 + +0.4 810,402 + +0.4 810,403 - +0.6 810,494 + +0.1 810,494 + +0.4 810,494 + +0.4 810,494 + +1.1 810,495 - -1.9 810,514 + +0.3 810,515 - -0.7 810,593 + -0.8 810,596 + -1.2 810,596 + -0.7 810,763 - AO353_03795 0.15 -0.8 810,763 - AO353_03795 0.15 -0.8 810,766 + AO353_03795 0.15 -1.6 810,767 - AO353_03795 0.16 -1.5 810,767 - AO353_03795 0.16 -0.1 810,767 - AO353_03795 0.16 -1.0 811,550 - AO353_03795 0.67 -2.1 811,647 - AO353_03795 0.73 -2.1 811,647 - AO353_03795 0.73 -0.3 811,647 - AO353_03795 0.73 -0.8 811,650 - AO353_03795 0.73 -1.3 811,829 + AO353_03795 0.85 +0.4 811,830 - AO353_03795 0.85 -2.0 811,856 + AO353_03795 0.87 -0.6 811,856 + AO353_03795 0.87 +0.1 811,857 - AO353_03795 0.87 -1.8 811,925 + -0.6 811,926 - -1.3 812,040 + -1.0 812,040 + -0.8 812,040 + -1.1 812,040 + -0.5 812,041 - -1.0 812,041 - -1.3 812,041 - -1.2 812,051 + +0.7 812,051 + +0.7 812,051 + +1.2 812,051 + +0.2 812,051 + -0.0 812,051 + +1.1 812,052 - -2.4 812,052 - +1.8 812,052 - -1.1 812,052 - +1.0 812,052 - -1.2 812,172 + +0.2 812,172 + -0.2 812,172 + +0.7 812,172 + +1.1 812,172 + +0.4 812,173 - +0.1 812,173 - -0.0 812,173 - -1.0 812,173 - -0.6 812,173 - +1.1 812,173 - +3.0 812,173 - -0.4 812,188 - -2.3 812,204 + -0.7 812,205 - -0.1 812,246 + -1.8 812,246 + +0.8 812,246 + +1.1 812,246 + +0.4 812,246 + +0.9 812,246 + -0.4 812,246 + +1.4 812,247 - -2.0 812,247 - +1.3 812,247 - -2.2 812,247 - +0.1 812,247 - +0.1 812,247 - +0.1 812,247 - -0.5 812,247 - +1.4 812,247 - +1.1 812,249 - +0.6 812,249 - +0.0 812,361 - +1.8 812,421 + AO353_03800 0.12 -0.7 812,488 + AO353_03800 0.16 -1.0 812,488 + AO353_03800 0.16 +0.5 812,488 + AO353_03800 0.16 +0.7 812,591 + AO353_03800 0.22 -1.5 812,591 + AO353_03800 0.22 -1.0 812,591 + AO353_03800 0.22 +1.6 812,592 - AO353_03800 0.22 +0.9 812,592 - AO353_03800 0.22 +0.5 812,592 - AO353_03800 0.22 -0.8 812,592 - AO353_03800 0.22 +0.1 812,606 + AO353_03800 0.22 -1.6 812,606 + AO353_03800 0.22 +0.3 812,607 - AO353_03800 0.22 -0.3 812,607 - AO353_03800 0.22 -1.0 812,621 + AO353_03800 0.23 -1.5 812,622 - AO353_03800 0.23 +0.5 812,660 + AO353_03800 0.25 -1.2 812,829 + AO353_03800 0.35 -1.1 812,829 + AO353_03800 0.35 +0.6 812,829 + AO353_03800 0.35 -1.3 812,829 + AO353_03800 0.35 -2.2 812,830 - AO353_03800 0.35 +0.5 812,830 - AO353_03800 0.35 +0.0 812,830 - AO353_03800 0.35 +0.9 812,830 - AO353_03800 0.35 +1.0 812,830 - AO353_03800 0.35 +1.3 812,830 - AO353_03800 0.35 +0.0 812,830 - AO353_03800 0.35 +0.3 812,830 - AO353_03800 0.35 -0.8 812,830 - AO353_03800 0.35 +1.2 812,830 - AO353_03800 0.35 -0.6 812,837 - AO353_03800 0.35 +1.3 812,921 + AO353_03800 0.40 -0.6 812,922 - AO353_03800 0.40 -1.5 812,922 - AO353_03800 0.40 +0.3 812,984 + AO353_03800 0.44 +0.3 812,984 + AO353_03800 0.44 +1.7 812,984 + AO353_03800 0.44 +0.3 812,984 + AO353_03800 0.44 -0.3 812,984 + AO353_03800 0.44 -1.0 812,984 + AO353_03800 0.44 -0.3 812,984 + AO353_03800 0.44 +2.0 812,985 - AO353_03800 0.44 +0.4 812,985 - AO353_03800 0.44 +1.0 812,985 - AO353_03800 0.44 +0.3 812,985 - AO353_03800 0.44 -1.0 812,985 - AO353_03800 0.44 +0.5 813,023 + AO353_03800 0.46 -0.8 813,023 + AO353_03800 0.46 -1.9 813,023 + AO353_03800 0.46 -1.9 813,024 - AO353_03800 0.46 -0.5 813,024 - AO353_03800 0.46 +0.8 813,024 - AO353_03800 0.46 -1.2 813,024 - AO353_03800 0.46 +1.1
Or see this region's nucleotide sequence