Experiment: Tetracycline 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03700 and AO353_03705 are separated by 182 nucleotides AO353_03705 and AO353_03710 are separated by 80 nucleotides AO353_03710 and AO353_03715 are separated by 340 nucleotides AO353_03715 and AO353_03720 are separated by 100 nucleotides
AO353_03700: AO353_03700 - hypothetical protein, at 791,567 to 792,562
_03700
AO353_03705: AO353_03705 - hypothetical protein, at 792,745 to 792,951
_03705
AO353_03710: AO353_03710 - formyltetrahydrofolate deformylase, at 793,032 to 793,880
_03710
AO353_03715: AO353_03715 - H-NS histone, at 794,221 to 794,595
_03715
AO353_03720: AO353_03720 - exonuclease I, at 794,696 to 796,123
_03720
Position (kb) 793
794 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 792.071 kb on + strand, within AO353_03700 at 792.072 kb on - strand, within AO353_03700 at 792.125 kb on - strand, within AO353_03700 at 792.125 kb on - strand, within AO353_03700 at 792.222 kb on + strand, within AO353_03700 at 792.222 kb on + strand, within AO353_03700 at 792.222 kb on + strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.223 kb on - strand, within AO353_03700 at 792.258 kb on - strand, within AO353_03700 at 792.259 kb on + strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.260 kb on - strand, within AO353_03700 at 792.269 kb on + strand, within AO353_03700 at 792.269 kb on + strand, within AO353_03700 at 792.269 kb on + strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.270 kb on - strand, within AO353_03700 at 792.424 kb on + strand, within AO353_03700 at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.470 kb on + strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.471 kb on - strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.473 kb on + strand at 792.474 kb on - strand at 792.474 kb on - strand at 792.474 kb on - strand at 792.474 kb on - strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.479 kb on + strand at 792.480 kb on - strand at 792.480 kb on - strand at 792.480 kb on - strand at 792.480 kb on - strand at 792.480 kb on - strand at 792.580 kb on + strand at 792.580 kb on + strand at 792.589 kb on - strand at 792.599 kb on + strand at 792.646 kb on - strand at 792.646 kb on - strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.753 kb on + strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.754 kb on - strand at 792.959 kb on - strand at 793.049 kb on + strand at 793.369 kb on + strand, within AO353_03710 at 793.370 kb on - strand, within AO353_03710 at 793.370 kb on - strand, within AO353_03710 at 793.472 kb on - strand, within AO353_03710 at 793.612 kb on - strand, within AO353_03710 at 793.612 kb on - strand, within AO353_03710 at 793.826 kb on + strand at 793.835 kb on + strand at 793.920 kb on - strand at 793.965 kb on + strand at 794.014 kb on + strand at 794.014 kb on + strand at 794.014 kb on + strand at 794.015 kb on - strand at 794.015 kb on - strand at 794.020 kb on - strand at 794.031 kb on - strand at 794.031 kb on - strand at 794.052 kb on + strand at 794.052 kb on + strand at 794.052 kb on + strand at 794.124 kb on - strand at 794.147 kb on + strand at 794.168 kb on + strand at 794.171 kb on + strand at 794.172 kb on - strand at 794.184 kb on + strand at 794.184 kb on + strand at 794.208 kb on + strand at 794.208 kb on + strand at 794.208 kb on + strand at 794.208 kb on + strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.209 kb on - strand at 794.213 kb on + strand at 794.214 kb on - strand at 794.259 kb on + strand, within AO353_03715 at 794.259 kb on + strand, within AO353_03715 at 794.412 kb on + strand, within AO353_03715 at 794.473 kb on + strand, within AO353_03715 at 794.679 kb on + strand at 794.679 kb on + strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.680 kb on - strand at 794.685 kb on + strand at 794.685 kb on + strand at 794.686 kb on - strand at 794.686 kb on - strand at 794.717 kb on + strand at 794.718 kb on - strand at 794.730 kb on + strand at 794.731 kb on - strand at 794.751 kb on - strand at 794.751 kb on - strand at 794.751 kb on - strand at 794.751 kb on - strand at 794.770 kb on + strand at 794.770 kb on + strand at 794.777 kb on - strand at 794.777 kb on - strand at 794.804 kb on - strand at 794.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0016 mg/ml remove 792,071 + AO353_03700 0.51 +1.0 792,072 - AO353_03700 0.51 -0.8 792,125 - AO353_03700 0.56 -1.3 792,125 - AO353_03700 0.56 -1.2 792,222 + AO353_03700 0.66 +0.8 792,222 + AO353_03700 0.66 -0.5 792,222 + AO353_03700 0.66 -2.3 792,223 - AO353_03700 0.66 -1.8 792,223 - AO353_03700 0.66 +0.4 792,223 - AO353_03700 0.66 +0.9 792,223 - AO353_03700 0.66 -1.3 792,258 - AO353_03700 0.69 -0.2 792,259 + AO353_03700 0.69 -1.0 792,260 - AO353_03700 0.70 -0.7 792,260 - AO353_03700 0.70 -0.8 792,260 - AO353_03700 0.70 -3.7 792,260 - AO353_03700 0.70 +1.4 792,269 + AO353_03700 0.70 +0.4 792,269 + AO353_03700 0.70 -0.3 792,269 + AO353_03700 0.70 +0.5 792,270 - AO353_03700 0.71 +0.8 792,270 - AO353_03700 0.71 -1.0 792,270 - AO353_03700 0.71 +0.8 792,270 - AO353_03700 0.71 -1.1 792,424 + AO353_03700 0.86 +0.4 792,470 + +2.0 792,470 + -1.5 792,470 + +0.9 792,470 + -0.5 792,470 + -0.3 792,470 + +1.3 792,471 - -0.8 792,471 - -0.6 792,471 - -1.2 792,471 - +0.2 792,471 - -0.4 792,471 - -0.0 792,471 - -1.2 792,471 - +1.8 792,471 - -1.5 792,471 - -0.5 792,473 + +1.3 792,473 + -3.1 792,473 + +1.7 792,473 + -1.3 792,473 + -0.9 792,473 + +2.6 792,473 + +0.7 792,473 + -0.1 792,473 + -2.1 792,473 + -0.3 792,474 - -1.6 792,474 - +0.1 792,474 - -1.0 792,474 - +1.1 792,479 + -0.0 792,479 + -0.7 792,479 + -0.1 792,479 + +0.4 792,479 + +0.2 792,479 + +0.6 792,479 + -0.7 792,480 - -2.5 792,480 - -1.0 792,480 - -0.6 792,480 - -2.6 792,480 - +0.3 792,580 + -1.2 792,580 + -1.2 792,589 - +0.4 792,599 + -0.7 792,646 - +0.7 792,646 - +1.3 792,753 + -1.5 792,753 + +0.7 792,753 + +0.2 792,753 + -0.3 792,753 + +0.6 792,753 + +1.4 792,753 + -1.3 792,753 + -0.4 792,753 + +1.7 792,753 + -0.9 792,753 + -0.9 792,753 + +0.0 792,754 - +0.1 792,754 - -0.7 792,754 - -1.6 792,754 - -0.0 792,754 - -1.2 792,754 - -1.2 792,754 - +0.3 792,754 - +0.5 792,754 - +0.3 792,754 - -0.0 792,959 - -0.8 793,049 + +1.6 793,369 + AO353_03710 0.40 -0.1 793,370 - AO353_03710 0.40 +0.7 793,370 - AO353_03710 0.40 -0.3 793,472 - AO353_03710 0.52 -0.6 793,612 - AO353_03710 0.68 +2.0 793,612 - AO353_03710 0.68 -0.0 793,826 + -1.6 793,835 + +2.0 793,920 - +0.2 793,965 + +0.4 794,014 + +0.4 794,014 + +0.2 794,014 + +0.7 794,015 - -1.0 794,015 - -1.7 794,020 - -1.9 794,031 - -0.6 794,031 - -0.6 794,052 + -1.7 794,052 + +2.2 794,052 + +0.8 794,124 - -0.7 794,147 + +0.3 794,168 + -0.3 794,171 + -3.3 794,172 - -0.3 794,184 + -0.5 794,184 + -2.9 794,208 + -2.3 794,208 + +0.7 794,208 + -0.8 794,208 + -2.0 794,209 - -1.5 794,209 - -2.3 794,209 - -1.3 794,209 - +0.4 794,209 - -0.3 794,209 - +1.0 794,209 - -0.3 794,213 + -1.6 794,214 - -1.0 794,259 + AO353_03715 0.10 -0.6 794,259 + AO353_03715 0.10 -0.8 794,412 + AO353_03715 0.51 -0.6 794,473 + AO353_03715 0.67 +0.5 794,679 + -0.3 794,679 + -1.8 794,680 - +1.3 794,680 - -0.2 794,680 - +0.7 794,680 - -0.5 794,680 - -0.6 794,680 - +1.7 794,680 - +0.3 794,680 - +0.6 794,680 - +0.8 794,685 + -1.2 794,685 + +0.1 794,686 - +0.4 794,686 - -0.6 794,717 + -1.2 794,718 - +1.4 794,730 + -2.1 794,731 - +0.6 794,751 - +1.2 794,751 - -0.6 794,751 - -0.2 794,751 - -1.0 794,770 + -0.6 794,770 + -0.8 794,777 - -0.2 794,777 - -1.2 794,804 - -1.3 794,804 - +0.9
Or see this region's nucleotide sequence