Experiment: Tetracycline 0.0016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03300 and AO353_03305 are separated by 197 nucleotides AO353_03305 and AO353_03310 are separated by 227 nucleotides AO353_03310 and AO353_03315 are separated by 380 nucleotides
AO353_03300: AO353_03300 - hypothetical protein, at 703,013 to 703,204
_03300
AO353_03305: AO353_03305 - hypothetical protein, at 703,402 to 703,779
_03305
AO353_03310: AO353_03310 - long-chain fatty acid--CoA ligase, at 704,007 to 705,707
_03310
AO353_03315: AO353_03315 - long-chain fatty acid--CoA ligase, at 706,088 to 707,776
_03315
Position (kb) 704
705
706 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 703.022 kb on - strand at 703.049 kb on - strand, within AO353_03300 at 703.133 kb on - strand, within AO353_03300 at 703.133 kb on - strand, within AO353_03300 at 703.180 kb on + strand, within AO353_03300 at 703.180 kb on + strand, within AO353_03300 at 703.181 kb on - strand, within AO353_03300 at 703.181 kb on - strand, within AO353_03300 at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.240 kb on + strand at 703.240 kb on + strand at 703.240 kb on + strand at 703.240 kb on + strand at 703.240 kb on + strand at 703.241 kb on - strand at 703.241 kb on - strand at 703.241 kb on - strand at 703.241 kb on - strand at 703.241 kb on - strand at 703.244 kb on + strand at 703.244 kb on + strand at 703.244 kb on + strand at 703.245 kb on - strand at 703.245 kb on - strand at 703.245 kb on - strand at 703.245 kb on - strand at 703.245 kb on - strand at 703.245 kb on - strand at 703.281 kb on + strand at 703.324 kb on + strand at 703.324 kb on + strand at 703.325 kb on - strand at 703.359 kb on + strand at 703.359 kb on + strand at 703.359 kb on + strand at 703.359 kb on + strand at 703.359 kb on + strand at 703.360 kb on - strand at 703.360 kb on - strand at 703.360 kb on - strand at 703.360 kb on - strand at 703.392 kb on + strand at 703.509 kb on + strand, within AO353_03305 at 703.509 kb on + strand, within AO353_03305 at 703.509 kb on + strand, within AO353_03305 at 703.555 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.720 kb on + strand, within AO353_03305 at 703.720 kb on + strand, within AO353_03305 at 703.721 kb on - strand, within AO353_03305 at 703.721 kb on - strand, within AO353_03305 at 703.778 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.969 kb on + strand at 703.969 kb on + strand at 703.970 kb on - strand at 703.970 kb on - strand at 704.009 kb on - strand at 704.131 kb on + strand at 704.286 kb on + strand, within AO353_03310 at 704.286 kb on + strand, within AO353_03310 at 704.287 kb on - strand, within AO353_03310 at 704.287 kb on - strand, within AO353_03310 at 704.287 kb on - strand, within AO353_03310 at 704.309 kb on - strand, within AO353_03310 at 704.365 kb on + strand, within AO353_03310 at 704.365 kb on + strand, within AO353_03310 at 704.365 kb on + strand, within AO353_03310 at 704.366 kb on - strand, within AO353_03310 at 704.366 kb on - strand, within AO353_03310 at 704.564 kb on + strand, within AO353_03310 at 704.577 kb on + strand, within AO353_03310 at 704.578 kb on - strand, within AO353_03310 at 704.578 kb on - strand at 704.578 kb on - strand, within AO353_03310 at 704.763 kb on - strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.917 kb on + strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.918 kb on - strand, within AO353_03310 at 704.926 kb on + strand, within AO353_03310 at 704.927 kb on - strand, within AO353_03310 at 704.927 kb on - strand, within AO353_03310 at 704.927 kb on - strand, within AO353_03310 at 705.067 kb on + strand, within AO353_03310 at 705.067 kb on + strand, within AO353_03310 at 705.068 kb on - strand, within AO353_03310 at 705.068 kb on - strand, within AO353_03310 at 705.173 kb on - strand, within AO353_03310 at 705.196 kb on + strand, within AO353_03310 at 705.196 kb on + strand, within AO353_03310 at 705.196 kb on + strand, within AO353_03310 at 705.197 kb on - strand, within AO353_03310 at 705.197 kb on - strand, within AO353_03310 at 705.197 kb on - strand, within AO353_03310 at 705.197 kb on - strand, within AO353_03310 at 705.197 kb on - strand, within AO353_03310 at 705.197 kb on - strand, within AO353_03310 at 705.382 kb on + strand, within AO353_03310 at 705.382 kb on + strand, within AO353_03310 at 705.382 kb on + strand, within AO353_03310 at 705.383 kb on - strand, within AO353_03310 at 705.383 kb on - strand, within AO353_03310 at 705.468 kb on + strand, within AO353_03310 at 705.468 kb on + strand, within AO353_03310 at 705.469 kb on - strand, within AO353_03310 at 705.469 kb on - strand, within AO353_03310 at 705.469 kb on - strand, within AO353_03310 at 705.501 kb on - strand, within AO353_03310 at 705.514 kb on + strand, within AO353_03310 at 705.514 kb on + strand, within AO353_03310 at 705.514 kb on + strand, within AO353_03310 at 705.514 kb on + strand, within AO353_03310 at 705.514 kb on + strand, within AO353_03310 at 705.515 kb on - strand, within AO353_03310 at 705.515 kb on - strand, within AO353_03310 at 705.541 kb on + strand at 705.542 kb on - strand at 705.542 kb on - strand at 705.553 kb on + strand at 705.553 kb on + strand at 705.553 kb on + strand at 705.554 kb on - strand at 705.554 kb on - strand at 705.554 kb on - strand at 705.576 kb on - strand at 705.578 kb on + strand at 705.578 kb on + strand at 705.578 kb on + strand at 705.578 kb on + strand at 705.578 kb on + strand at 705.578 kb on + strand at 705.579 kb on - strand at 705.579 kb on - strand at 705.619 kb on - strand at 705.619 kb on - strand at 705.633 kb on - strand at 705.679 kb on + strand at 705.679 kb on + strand at 705.679 kb on + strand at 705.679 kb on + strand at 705.679 kb on + strand at 705.679 kb on + strand at 705.679 kb on + strand at 705.679 kb on + strand at 705.679 kb on + strand at 705.680 kb on - strand at 705.680 kb on - strand at 705.680 kb on - strand at 705.680 kb on - strand at 705.683 kb on + strand at 705.683 kb on + strand at 705.683 kb on + strand at 705.683 kb on + strand at 705.683 kb on + strand at 705.683 kb on + strand at 705.683 kb on + strand at 705.684 kb on - strand at 705.684 kb on - strand at 705.684 kb on - strand at 705.755 kb on + strand at 705.755 kb on + strand at 705.756 kb on - strand at 705.756 kb on - strand at 705.756 kb on - strand at 705.756 kb on - strand at 705.758 kb on + strand at 705.758 kb on + strand at 705.758 kb on + strand at 705.758 kb on + strand at 705.759 kb on - strand at 705.759 kb on - strand at 705.791 kb on + strand at 705.791 kb on + strand at 705.791 kb on + strand at 705.791 kb on + strand at 705.792 kb on - strand at 705.792 kb on - strand at 705.792 kb on - strand at 705.792 kb on - strand at 705.796 kb on - strand at 705.826 kb on + strand at 705.826 kb on + strand at 705.827 kb on - strand at 705.827 kb on - strand at 705.846 kb on + strand at 705.846 kb on + strand at 705.847 kb on - strand at 705.849 kb on + strand at 705.849 kb on + strand at 705.849 kb on + strand at 705.849 kb on + strand at 705.869 kb on - strand at 705.896 kb on + strand at 705.897 kb on - strand at 705.897 kb on - strand at 705.926 kb on + strand at 705.927 kb on - strand at 706.033 kb on + strand at 706.033 kb on + strand at 706.033 kb on + strand at 706.033 kb on + strand at 706.034 kb on - strand at 706.041 kb on + strand at 706.042 kb on - strand at 706.042 kb on - strand at 706.042 kb on - strand at 706.089 kb on + strand at 706.179 kb on + strand at 706.179 kb on + strand at 706.179 kb on + strand at 706.180 kb on - strand at 706.180 kb on - strand at 706.180 kb on - strand at 706.180 kb on - strand at 706.203 kb on + strand at 706.204 kb on - strand at 706.244 kb on + strand at 706.245 kb on - strand at 706.406 kb on + strand, within AO353_03315 at 706.642 kb on - strand, within AO353_03315
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0016 mg/ml remove 703,022 - -1.4 703,049 - AO353_03300 0.19 -0.0 703,133 - AO353_03300 0.62 -0.1 703,133 - AO353_03300 0.62 -0.8 703,180 + AO353_03300 0.87 -0.0 703,180 + AO353_03300 0.87 +0.4 703,181 - AO353_03300 0.88 +0.0 703,181 - AO353_03300 0.88 +0.4 703,207 + +0.5 703,207 + +0.6 703,207 + -0.1 703,207 + -0.5 703,207 + +1.6 703,207 + +1.4 703,207 + -0.3 703,207 + +0.2 703,207 + -1.3 703,207 + +1.5 703,208 - -1.0 703,208 - -0.8 703,208 - -1.2 703,208 - +0.1 703,208 - +1.4 703,208 - -0.5 703,208 - -1.8 703,208 - -0.6 703,208 - -0.5 703,240 + -1.9 703,240 + +0.7 703,240 + -2.0 703,240 + -0.0 703,240 + +0.6 703,241 - -0.7 703,241 - +0.2 703,241 - +1.6 703,241 - -0.7 703,241 - -1.4 703,244 + +0.6 703,244 + -0.9 703,244 + +0.4 703,245 - +0.7 703,245 - +0.3 703,245 - +0.7 703,245 - +1.4 703,245 - -0.7 703,245 - +0.4 703,281 + -0.5 703,324 + -0.5 703,324 + +0.4 703,325 - +1.5 703,359 + -0.2 703,359 + +1.0 703,359 + +0.3 703,359 + +0.4 703,359 + +1.5 703,360 - -0.3 703,360 - +0.4 703,360 - -2.1 703,360 - -1.5 703,392 + +1.5 703,509 + AO353_03305 0.28 +0.3 703,509 + AO353_03305 0.28 -0.6 703,509 + AO353_03305 0.28 +3.2 703,555 + AO353_03305 0.40 +0.6 703,579 + AO353_03305 0.47 -0.4 703,579 + AO353_03305 0.47 +0.4 703,579 + AO353_03305 0.47 +1.6 703,579 + AO353_03305 0.47 +1.0 703,579 + AO353_03305 0.47 -0.6 703,579 + AO353_03305 0.47 -0.5 703,579 + AO353_03305 0.47 -2.0 703,580 - AO353_03305 0.47 +0.7 703,580 - AO353_03305 0.47 +1.0 703,580 - AO353_03305 0.47 +1.5 703,580 - AO353_03305 0.47 +0.4 703,580 - AO353_03305 0.47 -0.5 703,580 - AO353_03305 0.47 -0.5 703,580 - AO353_03305 0.47 +1.3 703,580 - AO353_03305 0.47 -0.5 703,580 - AO353_03305 0.47 -1.0 703,580 - AO353_03305 0.47 +0.0 703,580 - AO353_03305 0.47 +0.8 703,720 + AO353_03305 0.84 -0.1 703,720 + AO353_03305 0.84 -1.6 703,721 - AO353_03305 0.84 +0.6 703,721 - AO353_03305 0.84 -1.5 703,778 - -1.2 703,836 - +0.4 703,836 - -0.9 703,836 - -0.6 703,836 - -1.8 703,836 - -0.6 703,836 - -0.8 703,836 - -1.5 703,836 - +0.3 703,836 - -0.4 703,836 - -1.4 703,969 + +0.5 703,969 + +1.2 703,970 - +0.7 703,970 - +2.0 704,009 - -1.9 704,131 + +1.7 704,286 + AO353_03310 0.16 +1.6 704,286 + AO353_03310 0.16 +1.5 704,287 - AO353_03310 0.16 +0.7 704,287 - AO353_03310 0.16 +1.3 704,287 - AO353_03310 0.16 +2.0 704,309 - AO353_03310 0.18 +0.7 704,365 + AO353_03310 0.21 +1.0 704,365 + AO353_03310 0.21 +1.4 704,365 + AO353_03310 0.21 -0.4 704,366 - AO353_03310 0.21 -0.4 704,366 - AO353_03310 0.21 +0.7 704,564 + AO353_03310 0.33 +1.1 704,577 + AO353_03310 0.34 +1.2 704,578 - AO353_03310 0.34 +0.7 704,578 - -0.6 704,578 - AO353_03310 0.34 +2.4 704,763 - AO353_03310 0.44 +1.2 704,917 + AO353_03310 0.53 -0.0 704,917 + AO353_03310 0.53 +1.1 704,917 + AO353_03310 0.53 +1.0 704,917 + AO353_03310 0.53 -1.0 704,917 + AO353_03310 0.53 +2.3 704,917 + AO353_03310 0.53 -0.5 704,917 + AO353_03310 0.53 +0.5 704,917 + AO353_03310 0.53 +3.5 704,917 + AO353_03310 0.53 +0.7 704,917 + AO353_03310 0.53 +0.7 704,917 + AO353_03310 0.53 +0.6 704,917 + AO353_03310 0.53 +2.0 704,917 + AO353_03310 0.53 +0.8 704,917 + AO353_03310 0.53 +1.5 704,917 + AO353_03310 0.53 +1.1 704,917 + AO353_03310 0.53 +1.4 704,917 + AO353_03310 0.53 -1.0 704,918 - AO353_03310 0.54 +0.4 704,918 - AO353_03310 0.54 +1.7 704,918 - AO353_03310 0.54 +0.1 704,918 - AO353_03310 0.54 +1.0 704,918 - AO353_03310 0.54 +1.1 704,918 - AO353_03310 0.54 +2.0 704,918 - AO353_03310 0.54 +0.3 704,918 - AO353_03310 0.54 +1.3 704,918 - AO353_03310 0.54 +2.8 704,918 - AO353_03310 0.54 -1.0 704,918 - AO353_03310 0.54 +1.6 704,918 - AO353_03310 0.54 +2.0 704,918 - AO353_03310 0.54 -0.0 704,926 + AO353_03310 0.54 +1.2 704,927 - AO353_03310 0.54 +1.6 704,927 - AO353_03310 0.54 -0.8 704,927 - AO353_03310 0.54 +1.1 705,067 + AO353_03310 0.62 +0.6 705,067 + AO353_03310 0.62 +2.5 705,068 - AO353_03310 0.62 +0.6 705,068 - AO353_03310 0.62 -0.1 705,173 - AO353_03310 0.69 +1.6 705,196 + AO353_03310 0.70 +1.6 705,196 + AO353_03310 0.70 -1.0 705,196 + AO353_03310 0.70 +0.4 705,197 - AO353_03310 0.70 +0.0 705,197 - AO353_03310 0.70 +0.9 705,197 - AO353_03310 0.70 +0.8 705,197 - AO353_03310 0.70 +0.2 705,197 - AO353_03310 0.70 +0.8 705,197 - AO353_03310 0.70 +0.3 705,382 + AO353_03310 0.81 +0.7 705,382 + AO353_03310 0.81 +1.5 705,382 + AO353_03310 0.81 -2.3 705,383 - AO353_03310 0.81 +0.3 705,383 - AO353_03310 0.81 +0.9 705,468 + AO353_03310 0.86 +0.6 705,468 + AO353_03310 0.86 +1.0 705,469 - AO353_03310 0.86 +2.6 705,469 - AO353_03310 0.86 +1.0 705,469 - AO353_03310 0.86 -0.2 705,501 - AO353_03310 0.88 -0.3 705,514 + AO353_03310 0.89 +0.6 705,514 + AO353_03310 0.89 +2.7 705,514 + AO353_03310 0.89 -0.4 705,514 + AO353_03310 0.89 +1.6 705,514 + AO353_03310 0.89 +1.1 705,515 - AO353_03310 0.89 +1.2 705,515 - AO353_03310 0.89 -0.1 705,541 + -0.4 705,542 - +0.2 705,542 - -0.8 705,553 + +0.4 705,553 + -0.4 705,553 + +1.5 705,554 - +0.7 705,554 - +0.3 705,554 - +0.4 705,576 - -0.1 705,578 + -0.6 705,578 + +0.3 705,578 + +0.9 705,578 + -0.8 705,578 + -0.2 705,578 + +1.0 705,579 - +0.5 705,579 - +2.3 705,619 - +1.1 705,619 - -0.0 705,633 - +0.5 705,679 + +0.4 705,679 + +1.5 705,679 + -0.7 705,679 + +3.0 705,679 + +1.1 705,679 + +0.1 705,679 + +2.0 705,679 + +1.7 705,679 + +2.2 705,680 - +2.6 705,680 - -0.1 705,680 - -1.8 705,680 - +0.3 705,683 + +0.3 705,683 + -1.6 705,683 + +1.0 705,683 + +0.8 705,683 + +0.7 705,683 + -0.8 705,683 + +1.4 705,684 - +1.7 705,684 - -1.7 705,684 - +0.6 705,755 + +1.0 705,755 + +0.4 705,756 - +0.1 705,756 - -0.5 705,756 - -1.9 705,756 - -0.2 705,758 + +1.1 705,758 + -0.4 705,758 + -1.2 705,758 + +0.7 705,759 - -2.6 705,759 - +0.4 705,791 + +1.1 705,791 + -0.2 705,791 + +0.9 705,791 + +0.2 705,792 - +2.3 705,792 - +0.5 705,792 - +1.2 705,792 - -0.8 705,796 - +0.7 705,826 + +0.2 705,826 + +1.0 705,827 - +0.8 705,827 - +0.4 705,846 + +1.8 705,846 + +0.2 705,847 - -1.4 705,849 + -1.9 705,849 + +2.2 705,849 + +0.2 705,849 + -0.0 705,869 - +0.4 705,896 + -1.5 705,897 - -0.9 705,897 - -1.7 705,926 + -0.0 705,927 - -0.9 706,033 + -1.5 706,033 + -0.3 706,033 + +0.5 706,033 + +1.5 706,034 - +0.6 706,041 + -0.6 706,042 - +1.4 706,042 - +2.0 706,042 - -0.3 706,089 + +1.6 706,179 + -1.2 706,179 + -0.2 706,179 + +0.4 706,180 - +1.0 706,180 - -0.0 706,180 - +1.1 706,180 - +0.9 706,203 + +1.2 706,204 - +0.3 706,244 + +0.1 706,245 - -1.4 706,406 + AO353_03315 0.19 +0.2 706,642 - AO353_03315 0.33 +0.4
Or see this region's nucleotide sequence