Strain Fitness in Shewanella loihica PV-4 around Shew_3709

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
4,412,920	+		Shew_3708	0.39	+2.3
4,412,920	+		Shew_3708	0.39	+3.0
4,412,920	+		Shew_3708	0.39	+2.3
4,412,920	+		Shew_3708	0.39	+3.2
4,412,920	+		Shew_3708	0.39	+2.4
4,412,928	+		Shew_3708	0.40	+2.4
4,412,928	-		Shew_3708	0.40	+2.5
4,413,012	+		Shew_3708	0.53	+3.4
4,413,012	+		Shew_3708	0.53	+2.7
4,413,012	+		Shew_3708	0.53	+2.6
4,413,039	+		Shew_3708	0.57	+2.5
4,413,045	+		Shew_3708	0.58	+3.1
4,413,160	+		Shew_3708	0.76	+3.3
4,413,168	-		Shew_3708	0.77	+2.6
4,413,168	-		Shew_3708	0.77	+2.5
4,413,292	+				+0.2
4,413,718	+				+1.2
4,413,796	+				+1.6
4,413,898	-		Shew_3709	0.14	+1.5
4,414,097	-		Shew_3709	0.30	+1.8
4,414,140	-		Shew_3709	0.34	+1.8
4,414,160	+		Shew_3709	0.36	+1.6
4,414,168	-		Shew_3709	0.36	+2.1
4,414,178	-		Shew_3709	0.37	+2.0
4,414,311	+		Shew_3709	0.48	+1.4
4,414,319	-		Shew_3709	0.49	+1.8
4,414,629	+		Shew_3709	0.75	-1.3
4,414,685	+		Shew_3709	0.79	+1.5
4,414,693	-		Shew_3709	0.80	+1.7
4,414,693	-		Shew_3709	0.80	+1.2
4,414,693	-		Shew_3709	0.80	+1.6
4,414,693	-		Shew_3709	0.80	+1.7
4,414,700	+		Shew_3709	0.81	+1.1
4,414,853	-				+1.4
4,415,009	+				+1.8
4,415,262	-	tdh	Shew_3710	0.31	+1.6
4,415,451	+	tdh	Shew_3710	0.50	+1.7
4,415,648	+	tdh	Shew_3710	0.69	+1.6
4,415,674	+	tdh	Shew_3710	0.72	+1.7
4,415,733	-	tdh	Shew_3710	0.77	+1.4