Strain Fitness in Shewanella loihica PV-4 around Shew_3657

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
4,357,294	+		Shew_3656	0.74	+0.2
4,357,376	+				-0.4
4,357,395	+				+0.2
4,357,398	-				-0.1
4,357,398	-				+0.9
4,357,485	+				+0.5
4,357,493	-				+0.5
4,357,696	+				+0.4
4,357,808	+		Shew_3657	0.15	+1.2
4,357,963	-		Shew_3657	0.22	+0.4
4,358,103	+		Shew_3657	0.29	+1.5
4,358,444	+		Shew_3657	0.46	+0.7
4,358,444	+		Shew_3657	0.46	+0.9
4,358,452	-		Shew_3657	0.46	+0.5
4,358,452	-		Shew_3657	0.46	+1.0
4,358,452	-		Shew_3657	0.46	+0.4
4,358,452	-		Shew_3657	0.46	+1.0
4,358,452	-		Shew_3657	0.46	+1.5
4,358,452	-		Shew_3657	0.46	+0.6
4,358,631	+		Shew_3657	0.55	+0.4
4,358,817	-		Shew_3657	0.64	+1.2
4,358,892	+		Shew_3657	0.68	+0.7
4,358,945	+		Shew_3657	0.70	+1.0
4,359,030	-		Shew_3657	0.75	+0.7
4,359,030	-		Shew_3657	0.75	+1.4
4,359,030	-		Shew_3657	0.75	+0.9
4,359,061	+		Shew_3657	0.76	+1.2
4,359,071	+		Shew_3657	0.77	+0.4
4,359,150	+		Shew_3657	0.80	+0.8
4,359,189	+		Shew_3657	0.82	+0.9
4,359,232	-		Shew_3657	0.84	+0.8
4,359,309	+		Shew_3657	0.88	+0.5
4,359,309	+		Shew_3657	0.88	+0.2
4,359,309	+		Shew_3657	0.88	+0.9
4,359,414	-				-1.5
4,359,547	+				+0.8
4,359,547	-				+0.6
4,359,547	-				+1.5
4,359,881	-				-0.2
4,359,918	-				-0.2
4,360,141	-		Shew_3658	0.34	+2.6
4,360,316	-		Shew_3658	0.57	+0.2
4,360,334	+		Shew_3658	0.59	+0.1
4,360,401	+		Shew_3658	0.68	+0.2
4,360,401	+		Shew_3658	0.68	-0.0
4,360,409	-		Shew_3658	0.69	+0.1
4,360,409	-		Shew_3658	0.69	-1.8
4,360,409	-		Shew_3658	0.69	+0.4