Strain Fitness in Shewanella loihica PV-4 around Shew_3532

Experiment: Doxycycline hyclate 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3531 and Shew_3532 are separated by 69 nucleotidesShew_3532 and Shew_3533 are separated by 160 nucleotides Shew_3531: Shew_3531 - aromatic amino acid transporter (RefSeq), at 4,218,753 to 4,220,009 _3531 Shew_3532: Shew_3532 - globin (RefSeq), at 4,220,079 to 4,220,492 _3532 Shew_3533: Shew_3533 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 4,220,653 to 4,221,432 _3533 Position (kb) 4220 4221Strain fitness (log2 ratio) -2 -1 0 1at 4219.096 kb on + strand, within Shew_3531at 4219.129 kb on + strand, within Shew_3531at 4219.162 kb on + strand, within Shew_3531at 4219.550 kb on - strand, within Shew_3531at 4219.555 kb on - strand, within Shew_3531at 4219.666 kb on + strand, within Shew_3531at 4219.666 kb on + strand, within Shew_3531at 4219.674 kb on - strand, within Shew_3531at 4219.727 kb on + strand, within Shew_3531at 4219.727 kb on + strand, within Shew_3531at 4219.727 kb on + strand, within Shew_3531at 4219.940 kb on + strandat 4220.185 kb on + strand, within Shew_3532at 4220.246 kb on - strand, within Shew_3532at 4220.534 kb on - strandat 4221.066 kb on + strand, within Shew_3533at 4221.122 kb on - strand, within Shew_3533at 4221.143 kb on + strand, within Shew_3533at 4221.232 kb on + strand, within Shew_3533at 4221.393 kb on + strandat 4221.427 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
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4,219,096 + Shew_3531 0.27 -1.7
4,219,129 + Shew_3531 0.30 -2.5
4,219,162 + Shew_3531 0.33 -0.8
4,219,550 - Shew_3531 0.63 -1.8
4,219,555 - Shew_3531 0.64 -1.0
4,219,666 + Shew_3531 0.73 -2.0
4,219,666 + Shew_3531 0.73 -1.3
4,219,674 - Shew_3531 0.73 -2.2
4,219,727 + Shew_3531 0.77 -1.2
4,219,727 + Shew_3531 0.77 -1.8
4,219,727 + Shew_3531 0.77 -1.5
4,219,940 + -2.4
4,220,185 + Shew_3532 0.26 -1.3
4,220,246 - Shew_3532 0.40 -0.0
4,220,534 - -0.3
4,221,066 + Shew_3533 0.53 -0.3
4,221,122 - Shew_3533 0.60 +0.2
4,221,143 + Shew_3533 0.63 +0.4
4,221,232 + Shew_3533 0.74 +0.1
4,221,393 + -0.4
4,221,427 + -0.3

Or see this region's nucleotide sequence