Strain Fitness in Shewanella loihica PV-4 around Shew_3487

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
4,172,116	+				+0.6
4,173,284	-	pyrE	Shew_3487	0.49	+2.3
4,173,488	+	pyrE	Shew_3487	0.81	+2.6
4,173,488	+	pyrE	Shew_3487	0.81	+2.3
4,173,496	-	pyrE	Shew_3487	0.82	+2.3
4,173,526	-	pyrE	Shew_3487	0.86	+2.4
4,173,556	+				+2.3
4,173,612	-				+2.3
4,173,750	-				-1.0
4,173,897	+		Shew_3488	0.28	+1.2
4,173,963	-		Shew_3488	0.37	-2.4
4,173,996	+		Shew_3488	0.42	+1.3
4,174,001	+		Shew_3488	0.43	+1.3
4,174,009	-		Shew_3488	0.44	-0.8
4,174,066	-		Shew_3488	0.52	-0.8
4,174,306	-		Shew_3488	0.85	-0.8
4,174,353	-				-0.6
4,174,356	-				-1.0
4,174,358	+				+1.3
4,174,390	-				+0.2
4,174,472	+				+0.1
4,174,530	-				-0.2
4,174,599	+				-0.1