Strain Fitness in Shewanella loihica PV-4 around Shew_1920

Experiment: Doxycycline hyclate 10 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1917 and Shew_1918 are separated by 50 nucleotidesShew_1918 and Shew_1919 are separated by 11 nucleotidesShew_1919 and Shew_1920 are separated by 81 nucleotidesShew_1920 and Shew_1921 are separated by 291 nucleotidesShew_1921 and Shew_1922 are separated by 44 nucleotides Shew_1917: Shew_1917 - flavodoxin FldA (RefSeq), at 2,215,844 to 2,216,371 _1917 Shew_1918: Shew_1918 - LexA regulated protein (RefSeq), at 2,216,422 to 2,216,694 _1918 Shew_1919: Shew_1919 - hypothetical protein (RefSeq), at 2,216,706 to 2,216,927 _1919 Shew_1920: Shew_1920 - alpha/beta hydrolase fold (RefSeq), at 2,217,009 to 2,217,776 _1920 Shew_1921: Shew_1921 - replication initiation regulator SeqA (RefSeq), at 2,218,068 to 2,218,598 _1921 Shew_1922: Shew_1922 - phosphoglucomutase (RefSeq), at 2,218,643 to 2,220,322 _1922 Position (kb) 2217 2218Strain fitness (log2 ratio) -1 0 1at 2216.658 kb on + strand, within Shew_1918at 2217.287 kb on - strand, within Shew_1920at 2217.389 kb on + strand, within Shew_1920at 2217.489 kb on + strand, within Shew_1920at 2217.492 kb on - strand, within Shew_1920at 2217.973 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml
remove
2,216,658 + Shew_1918 0.86 -0.2
2,217,287 - Shew_1920 0.36 +1.3
2,217,389 + Shew_1920 0.49 +0.7
2,217,489 + Shew_1920 0.62 +1.0
2,217,492 - Shew_1920 0.63 +0.7
2,217,973 + +0.4

Or see this region's nucleotide sequence