Strain Fitness in Shewanella loihica PV-4 around Shew_1886

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
2,170,518	+		Shew_1885	0.11	+0.9
2,170,661	+		Shew_1885	0.28	+0.2
2,170,661	+		Shew_1885	0.28	+0.9
2,170,669	-		Shew_1885	0.29	+0.2
2,170,669	-		Shew_1885	0.29	-0.1
2,170,669	-		Shew_1885	0.29	-0.9
2,170,686	+		Shew_1885	0.31	+1.0
2,170,731	+		Shew_1885	0.36	+0.2
2,170,736	+		Shew_1885	0.37	+0.0
2,170,742	+		Shew_1885	0.37	-0.3
2,170,742	+		Shew_1885	0.37	-0.4
2,170,742	+		Shew_1885	0.37	+2.0
2,170,742	+		Shew_1885	0.37	-0.8
2,170,744	-		Shew_1885	0.37	+1.7
2,170,744	-		Shew_1885	0.37	+2.0
2,170,750	-		Shew_1885	0.38	-1.0
2,170,750	-		Shew_1885	0.38	+1.6
2,170,750	-		Shew_1885	0.38	-1.4
2,170,750	-		Shew_1885	0.38	+1.2
2,170,750	-		Shew_1885	0.38	+0.6
2,170,750	-		Shew_1885	0.38	-0.2
2,170,752	-		Shew_1885	0.38	-1.2
2,170,752	-		Shew_1885	0.38	-0.9
2,170,757	+		Shew_1885	0.39	+1.2
2,170,763	-		Shew_1885	0.40	+0.7
2,170,764	+		Shew_1885	0.40	-3.2
2,170,764	+		Shew_1885	0.40	+0.0
2,170,764	+		Shew_1885	0.40	+0.9
2,170,764	+		Shew_1885	0.40	-1.3
2,170,764	+		Shew_1885	0.40	+0.1
2,170,764	+		Shew_1885	0.40	+2.2
2,170,764	+		Shew_1885	0.40	-0.5
2,170,765	-		Shew_1885	0.40	-0.0
2,170,765	-		Shew_1885	0.40	-1.6
2,170,765	-		Shew_1885	0.40	-0.5
2,170,765	-		Shew_1885	0.40	-0.4
2,170,765	+		Shew_1885	0.40	-0.4
2,170,765	-		Shew_1885	0.40	-0.8
2,170,765	+		Shew_1885	0.40	+0.1
2,170,765	-		Shew_1885	0.40	+0.3
2,170,772	-		Shew_1885	0.41	-0.2
2,170,772	-		Shew_1885	0.41	+0.2
2,170,772	-		Shew_1885	0.41	-0.0
2,170,772	-		Shew_1885	0.41	+0.1
2,170,772	-		Shew_1885	0.41	-1.0
2,170,772	-		Shew_1885	0.41	+1.0
2,170,843	-		Shew_1885	0.49	+0.2
2,170,925	+		Shew_1885	0.58	+0.2
2,170,925	+		Shew_1885	0.58	-0.1
2,170,925	+		Shew_1885	0.58	+0.2
2,170,933	+		Shew_1885	0.59	+0.4
2,170,941	-		Shew_1885	0.60	+0.1
2,170,947	+		Shew_1885	0.61	-0.2
2,170,960	-		Shew_1885	0.62	+0.9
2,170,960	-		Shew_1885	0.62	-0.2
2,170,960	-		Shew_1885	0.62	-0.7
2,170,965	-		Shew_1885	0.63	+0.0
2,171,045	-		Shew_1885	0.72	+0.0
2,171,054	-		Shew_1885	0.73	+0.7
2,171,065	+		Shew_1885	0.75	+1.2
2,171,065	+		Shew_1885	0.75	-0.4
2,171,093	+		Shew_1885	0.78	-2.2
2,171,093	+		Shew_1885	0.78	-0.6
2,171,093	+		Shew_1885	0.78	+0.2
2,171,101	-		Shew_1885	0.79	-1.2
2,171,101	-		Shew_1885	0.79	+1.0
2,171,101	-		Shew_1885	0.79	-0.0
2,171,101	-		Shew_1885	0.79	-1.5
2,171,106	-		Shew_1885	0.79	-0.5
2,171,106	+		Shew_1885	0.79	+0.3
2,171,112	-		Shew_1885	0.80	-0.2
2,171,112	+		Shew_1885	0.80	-2.4
2,171,125	+		Shew_1885	0.81	+0.6
2,171,136	+		Shew_1885	0.83	+1.1
2,171,136	+		Shew_1885	0.83	+0.1
2,171,143	-		Shew_1885	0.84	-0.2
2,171,179	+		Shew_1885	0.88	+0.5
2,171,203	+				+0.4
2,171,211	-				-0.5
2,171,211	-				-0.2
2,171,219	-				-0.6
2,171,219	+				-0.8
2,171,281	+				+0.1
2,171,372	+				-0.6
2,171,372	+				+0.2
2,171,380	-				+0.1
2,171,380	-				+0.7
2,171,420	+				+0.1
2,171,532	+				+0.3
2,171,553	+				-0.3
2,171,571	-				+0.4
2,171,682	+				+0.3
2,171,682	+				-0.3
2,171,690	-				-0.2
2,171,690	-				+0.5
2,171,702	+				-0.2
2,171,847	+		Shew_1886	0.17	+1.2
2,171,855	-		Shew_1886	0.17	+0.5
2,171,866	-		Shew_1886	0.18	+0.3
2,172,131	-		Shew_1886	0.31	+1.3
2,173,370	+				+0.4
2,173,401	+				-0.1
2,173,417	+				+0.9
2,173,425	-				+0.6
2,173,575	-				+1.0
2,173,623	+				+0.1
2,173,631	+				+0.2
2,174,033	+		Shew_1887	0.27	-0.3
2,174,033	+		Shew_1887	0.27	+0.4
2,174,041	-		Shew_1887	0.27	-0.7
2,174,113	+		Shew_1887	0.31	+0.1