Strain Fitness in Shewanella loihica PV-4 around Shew_R0049

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
1,694,147	-		Shew_1469	0.51	+0.1
1,694,205	+		Shew_1469	0.54	+0.1
1,694,221	+		Shew_1469	0.55	-0.2
1,694,221	+		Shew_1469	0.55	-1.3
1,694,221	+		Shew_1469	0.55	+1.4
1,694,224	-		Shew_1469	0.56	+0.6
1,694,226	+		Shew_1469	0.56	-0.3
1,694,231	+		Shew_1469	0.56	+0.6
1,694,231	+		Shew_1469	0.56	-0.3
1,694,239	-		Shew_1469	0.56	-0.6
1,694,239	-		Shew_1469	0.56	-0.8
1,694,239	-		Shew_1469	0.56	+1.3
1,694,239	-		Shew_1469	0.56	-0.3
1,694,241	+		Shew_1469	0.57	+0.6
1,694,241	+		Shew_1469	0.57	+0.1
1,694,241	+		Shew_1469	0.57	-2.5
1,694,253	+		Shew_1469	0.57	+1.3
1,694,253	+		Shew_1469	0.57	-0.2
1,694,253	+		Shew_1469	0.57	+0.1
1,694,261	-		Shew_1469	0.58	+0.9
1,694,261	-		Shew_1469	0.58	+0.2
1,694,271	-		Shew_1469	0.58	-0.4
1,694,271	-		Shew_1469	0.58	+2.5
1,694,271	-		Shew_1469	0.58	+0.8
1,694,316	+		Shew_1469	0.61	-0.4
1,694,316	+		Shew_1469	0.61	+0.7
1,694,331	+		Shew_1469	0.62	+0.2
1,694,333	+		Shew_1469	0.62	+1.0
1,694,343	+		Shew_1469	0.63	+0.7
1,694,369	+		Shew_1469	0.64	-0.3
1,694,391	-		Shew_1469	0.66	-0.2
1,694,393	+		Shew_1469	0.66	-0.2
1,694,410	-		Shew_1469	0.67	+0.5
1,694,467	-		Shew_1469	0.70	-1.5
1,694,467	-		Shew_1469	0.70	+0.6
1,694,478	+		Shew_1469	0.71	-0.1
1,694,478	+		Shew_1469	0.71	-0.5
1,694,479	-		Shew_1469	0.71	+0.3
1,694,483	+		Shew_1469	0.71	-0.0
1,694,483	+		Shew_1469	0.71	-0.2
1,694,483	+		Shew_1469	0.71	+0.7
1,694,483	+		Shew_1469	0.71	-0.1
1,694,483	+		Shew_1469	0.71	-0.3
1,694,483	+		Shew_1469	0.71	+0.2
1,694,483	+		Shew_1469	0.71	+0.3
1,694,483	+		Shew_1469	0.71	-0.8
1,694,483	+		Shew_1469	0.71	+0.3
1,694,483	+		Shew_1469	0.71	+0.0
1,694,483	+		Shew_1469	0.71	+0.5
1,694,483	+		Shew_1469	0.71	+0.2
1,694,483	+		Shew_1469	0.71	+0.2
1,694,483	+		Shew_1469	0.71	-1.3
1,694,483	+		Shew_1469	0.71	-0.6
1,694,483	+		Shew_1469	0.71	+0.2
1,694,483	+		Shew_1469	0.71	+0.1
1,694,483	+		Shew_1469	0.71	+0.7
1,694,483	+		Shew_1469	0.71	-1.8
1,694,486	-		Shew_1469	0.72	+1.2
1,694,486	-		Shew_1469	0.72	-0.4
1,694,488	+		Shew_1469	0.72	+0.0
1,694,491	-		Shew_1469	0.72	+1.0
1,694,491	-		Shew_1469	0.72	+0.4
1,694,491	-		Shew_1469	0.72	+0.1
1,694,491	-		Shew_1469	0.72	+0.4
1,694,491	-		Shew_1469	0.72	+0.6
1,694,491	-		Shew_1469	0.72	+0.3
1,694,491	-		Shew_1469	0.72	+0.1
1,694,491	-		Shew_1469	0.72	-0.3
1,694,491	-		Shew_1469	0.72	+0.0
1,694,491	-		Shew_1469	0.72	+0.4
1,694,491	-		Shew_1469	0.72	-0.6
1,694,491	-		Shew_1469	0.72	+1.0
1,694,491	-		Shew_1469	0.72	+0.8
1,694,491	-		Shew_1469	0.72	-0.6
1,694,544	+		Shew_1469	0.75	+0.2
1,694,559	+		Shew_1469	0.76	-0.2
1,694,559	+		Shew_1469	0.76	-0.3
1,694,559	+		Shew_1469	0.76	+0.5
1,694,559	+		Shew_1469	0.76	+0.0
1,694,559	+		Shew_1469	0.76	+0.4
1,694,566	+		Shew_1469	0.77	-0.3
1,694,566	+		Shew_1469	0.77	+0.3
1,694,566	+		Shew_1469	0.77	+0.3
1,694,567	-		Shew_1469	0.77	-0.4
1,694,567	-		Shew_1469	0.77	+0.6
1,694,567	-		Shew_1469	0.77	+0.8
1,694,574	-		Shew_1469	0.77	+0.1
1,694,576	+		Shew_1469	0.77	+0.8
1,694,576	+		Shew_1469	0.77	+0.7
1,694,576	+		Shew_1469	0.77	+0.3
1,694,576	+		Shew_1469	0.77	+0.4
1,694,581	+		Shew_1469	0.77	-0.6
1,694,581	+		Shew_1469	0.77	+0.1
1,694,584	-		Shew_1469	0.78	+0.2
1,694,584	-		Shew_1469	0.78	-1.2
1,694,584	-		Shew_1469	0.78	-1.8
1,694,584	-		Shew_1469	0.78	+0.0
1,694,622	+		Shew_1469	0.80	+1.7
1,694,622	+		Shew_1469	0.80	-0.1
1,694,627	+		Shew_1469	0.80	-0.2
1,694,630	+		Shew_1469	0.80	+1.5
1,694,630	-		Shew_1469	0.80	-0.1
1,694,632	+		Shew_1469	0.81	+0.1
1,694,632	+		Shew_1469	0.81	+1.0
1,694,632	+		Shew_1469	0.81	+0.4
1,694,632	+		Shew_1469	0.81	+1.2
1,694,632	+		Shew_1469	0.81	+1.1
1,694,635	-		Shew_1469	0.81	+0.5
1,694,635	-		Shew_1469	0.81	+0.4
1,694,635	-		Shew_1469	0.81	+0.4
1,694,635	-		Shew_1469	0.81	-0.7
1,694,640	-		Shew_1469	0.81	+0.9
1,694,640	-		Shew_1469	0.81	-0.2
1,694,866	+				+0.2
1,694,876	+				+0.7
1,694,877	-				-0.5
1,694,877	-				+0.2
1,694,919	-				-0.9
1,694,921	+				+0.6
1,694,921	+				+1.0
1,694,921	+				-0.3
1,694,927	+				-0.2
1,694,969	+				+0.1
1,694,970	+				+0.0
1,694,997	-				+1.3
1,695,008	-				+1.2
1,695,048	+				-0.8
1,695,186	+		Shew_R0049	0.51	+1.3
1,695,194	-		Shew_R0049	0.61	+0.3
1,695,194	-		Shew_R0049	0.61	+0.9
1,695,209	-		Shew_R0049	0.81	+0.7
1,695,264	-				+1.0
1,696,139	-		Shew_1470	0.41	+0.2
1,696,213	+		Shew_1470	0.45	-1.2