Strain Fitness in Shewanella loihica PV-4 around Shew_1411

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
1,624,703	+				+0.2
1,624,703	+				-0.4
1,624,703	+				-0.1
1,624,703	+				+0.1
1,624,703	+				-0.1
1,624,703	+				-0.3
1,624,703	+				+1.4
1,624,703	+				-0.9
1,624,703	+				-0.2
1,624,740	+				+1.2
1,624,759	+				+1.2
1,624,796	+		Shew_1411	0.11	+0.8
1,624,796	+		Shew_1411	0.11	+1.3
1,624,796	+		Shew_1411	0.11	+1.4
1,624,798	+		Shew_1411	0.11	+1.0
1,624,798	+		Shew_1411	0.11	+1.3
1,624,798	+		Shew_1411	0.11	+1.1
1,624,798	+		Shew_1411	0.11	+1.4
1,624,804	-		Shew_1411	0.12	+0.9
1,624,804	-		Shew_1411	0.12	-0.1
1,624,806	-		Shew_1411	0.13	+1.2
1,624,825	-		Shew_1411	0.16	-0.1
1,624,855	+		Shew_1411	0.21	+1.1
1,624,855	+		Shew_1411	0.21	+1.1
1,624,863	-		Shew_1411	0.22	+2.8
1,624,866	+		Shew_1411	0.23	+1.8
1,624,908	+		Shew_1411	0.30	+1.3
1,624,908	+		Shew_1411	0.30	+1.4
1,624,919	+		Shew_1411	0.32	+1.4
1,625,016	+		Shew_1411	0.49	+1.3
1,625,016	+		Shew_1411	0.49	+1.0
1,625,047	+		Shew_1411	0.54	+1.5
1,625,047	+		Shew_1411	0.54	+0.5
1,625,047	+		Shew_1411	0.54	+1.3
1,625,047	+		Shew_1411	0.54	+1.0
1,625,047	+		Shew_1411	0.54	+1.2
1,625,047	+		Shew_1411	0.54	+1.3
1,625,047	+		Shew_1411	0.54	+0.9
1,625,047	+		Shew_1411	0.54	+1.0
1,625,052	+		Shew_1411	0.55	+1.1
1,625,057	-		Shew_1411	0.56	+0.9
1,625,067	-		Shew_1411	0.58	+2.7
1,625,067	-		Shew_1411	0.58	+1.8
1,625,067	-		Shew_1411	0.58	+0.9
1,625,102	+		Shew_1411	0.64	+0.7
1,625,156	+		Shew_1411	0.73	+1.2
1,625,163	-		Shew_1411	0.74	+0.5
1,625,181	+		Shew_1411	0.77	+0.8
1,625,182	-		Shew_1411	0.78	+1.2
1,625,183	-		Shew_1411	0.78	+0.9
1,625,193	+		Shew_1411	0.79	+1.1
1,625,194	-		Shew_1411	0.80	-0.9
1,625,195	+		Shew_1411	0.80	+1.4
1,625,196	-		Shew_1411	0.80	-0.7
1,625,199	-		Shew_1411	0.80	+0.9
1,625,222	-		Shew_1411	0.84	-0.7
1,625,254	+				+1.3
1,625,254	+				+0.5
1,625,286	-				+3.9