Strain Fitness in Shewanella loihica PV-4 around Shew_1252

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
1,449,836	+		Shew_1251	0.55	+0.6
1,449,836	+		Shew_1251	0.55	-0.0
1,449,844	-		Shew_1251	0.56	-0.0
1,449,844	-		Shew_1251	0.56	+0.0
1,449,844	-		Shew_1251	0.56	+0.4
1,449,880	+		Shew_1251	0.58	+0.5
1,449,893	-		Shew_1251	0.59	+1.0
1,449,911	+		Shew_1251	0.60	-0.2
1,449,919	+		Shew_1251	0.61	-2.5
1,449,927	-		Shew_1251	0.62	-0.0
1,449,927	-		Shew_1251	0.62	+0.4
1,449,927	-		Shew_1251	0.62	-0.1
1,449,927	-		Shew_1251	0.62	+1.1
1,449,927	-		Shew_1251	0.62	+0.4
1,449,968	+		Shew_1251	0.64	+0.2
1,450,030	+		Shew_1251	0.69	+0.5
1,450,030	+		Shew_1251	0.69	+0.2
1,450,030	+		Shew_1251	0.69	+0.1
1,450,038	-		Shew_1251	0.69	-0.0
1,450,040	+		Shew_1251	0.69	-0.1
1,450,065	+		Shew_1251	0.71	+0.0
1,450,065	+		Shew_1251	0.71	+0.3
1,450,082	+		Shew_1251	0.72	+0.0
1,450,088	+		Shew_1251	0.73	+0.1
1,450,088	+		Shew_1251	0.73	+0.6
1,450,090	-		Shew_1251	0.73	+1.7
1,450,090	-		Shew_1251	0.73	-0.2
1,450,225	+		Shew_1251	0.82	-0.2
1,450,262	+		Shew_1251	0.84	-0.0
1,450,274	+		Shew_1251	0.85	-0.2
1,450,274	+		Shew_1251	0.85	+0.0
1,450,274	+		Shew_1251	0.85	+1.5
1,450,274	+		Shew_1251	0.85	-0.1
1,450,274	+		Shew_1251	0.85	-0.2
1,450,282	-		Shew_1251	0.86	+0.1
1,450,282	-		Shew_1251	0.86	-0.3
1,450,282	-		Shew_1251	0.86	+0.3
1,450,282	-		Shew_1251	0.86	+0.4
1,450,293	-		Shew_1251	0.87	+0.1
1,450,435	+				+2.0
1,450,438	+				-0.0
1,450,443	+				+0.0
1,450,443	+				+1.0
1,450,444	-				+0.5
1,450,444	-				+0.3
1,450,450	+				+0.1
1,450,450	+				+0.3
1,450,451	+				-0.5
1,450,451	+				+0.1
1,450,451	+				+0.6
1,450,451	+				+0.3
1,450,458	-				-0.5
1,450,459	-				+1.0
1,450,459	-				-0.4
1,450,531	-				+0.0
1,450,593	-				+0.1
1,450,594	-				-0.3
1,450,613	-				-0.2
1,450,620	+				+2.5
1,450,620	+				-1.7
1,450,638	-				+0.9
1,450,688	+				+0.2
1,450,823	-				-0.1
1,450,834	-				+0.3
1,450,881	+		Shew_1252	0.11	+1.1
1,450,918	+		Shew_1252	0.17	-0.2
1,450,918	+		Shew_1252	0.17	+0.2
1,450,926	-		Shew_1252	0.18	-0.0
1,450,926	-		Shew_1252	0.18	+0.4
1,450,967	-		Shew_1252	0.24	+0.6
1,451,077	+		Shew_1252	0.40	+0.7
1,451,133	+		Shew_1252	0.49	+2.2
1,451,178	-		Shew_1252	0.56	+0.4
1,451,280	-		Shew_1252	0.71	-0.2
1,451,280	-		Shew_1252	0.71	+0.7
1,451,416	+				+0.3
1,451,416	+				+0.7
1,451,476	+				+0.5
1,451,532	+				+0.3
1,451,540	-				+0.3
1,451,559	-				+0.7
1,451,683	-		Shew_1253	0.17	+1.0
1,451,806	+		Shew_1253	0.33	+0.2
1,451,811	+		Shew_1253	0.34	-0.4
1,451,814	-		Shew_1253	0.35	+0.0
1,451,814	-		Shew_1253	0.35	+0.1
1,451,814	-		Shew_1253	0.35	+0.1
1,451,819	-		Shew_1253	0.35	+0.6
1,451,922	+		Shew_1253	0.49	-2.0
1,451,931	+		Shew_1253	0.51	+1.1
1,452,127	-		Shew_1253	0.78	-0.6
1,452,228	+				+0.6
1,452,228	+				-0.6
1,452,228	+				-0.3
1,452,310	+				+0.7
1,452,320	+				+0.4
1,452,333	+				+0.4
1,452,346	-				-0.1