Strain Fitness in Shewanella loihica PV-4 around Shew_1202

Experiment: Doxycycline hyclate 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 10 mg/ml
1,394,535	-	rumA	Shew_1201	0.51	+0.1
1,394,642	-	rumA	Shew_1201	0.59	-0.0
1,394,863	+	rumA	Shew_1201	0.75	+0.1
1,395,105	+				+0.2
1,395,422	-				+1.7
1,395,616	+		Shew_1202	0.12	+1.6
1,395,698	+		Shew_1202	0.15	+2.1
1,395,714	+		Shew_1202	0.16	+3.1
1,396,301	-		Shew_1202	0.43	+2.3
1,396,318	+		Shew_1202	0.44	+1.8
1,396,599	-		Shew_1202	0.56	-1.0
1,396,610	+		Shew_1202	0.57	+1.4
1,397,233	+		Shew_1202	0.85	+2.5
1,397,256	+		Shew_1202	0.86	+2.2
1,397,381	-				+2.1
1,397,678	-				+0.2
1,397,692	+				+0.3
1,397,802	+	mazG	Shew_1203	0.17	+0.1
1,397,934	+	mazG	Shew_1203	0.34	+0.0
1,398,094	+	mazG	Shew_1203	0.54	-0.5
1,398,149	+	mazG	Shew_1203	0.61	+1.7