Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0583 and Shew_0584 are separated by 110 nucleotides Shew_0584 and Shew_0585 are separated by 81 nucleotides Shew_0585 and Shew_0586 are separated by 443 nucleotides
Shew_0583: Shew_0583 - two component transcriptional regulator (RefSeq), at 661,411 to 662,085
_0583
Shew_0584: Shew_0584 - hypothetical protein (RefSeq), at 662,196 to 662,534
_0584
Shew_0585: Shew_0585 - cAMP-regulatory protein (RefSeq), at 662,616 to 663,251
_0585
Shew_0586: Shew_0586 - TPR repeat-containing protein (RefSeq), at 663,695 to 664,474
_0586
Position (kb) 662
663
664 Strain fitness (log2 ratio) -1
0
1
2 at 661.685 kb on - strand, within Shew_0583 at 661.685 kb on - strand, within Shew_0583 at 662.378 kb on + strand, within Shew_0584 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.121 kb on + strand, within Shew_0585 at 663.129 kb on - strand, within Shew_0585 at 663.129 kb on - strand, within Shew_0585 at 663.226 kb on + strand at 663.226 kb on + strand at 663.226 kb on + strand at 663.226 kb on + strand at 663.485 kb on + strand at 663.495 kb on + strand at 663.522 kb on - strand at 663.551 kb on + strand at 663.593 kb on - strand at 663.625 kb on - strand at 663.625 kb on - strand at 663.627 kb on + strand at 663.627 kb on + strand at 663.932 kb on - strand, within Shew_0586 at 664.125 kb on + strand, within Shew_0586 at 664.238 kb on - strand, within Shew_0586
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 661,685 - Shew_0583 0.41 -0.1 661,685 - Shew_0583 0.41 -0.0 662,378 + Shew_0584 0.54 +0.8 663,121 + Shew_0585 0.79 -1.3 663,121 + Shew_0585 0.79 -0.5 663,121 + Shew_0585 0.79 +0.3 663,121 + Shew_0585 0.79 +2.0 663,121 + Shew_0585 0.79 +1.3 663,129 - Shew_0585 0.81 +1.2 663,129 - Shew_0585 0.81 +0.7 663,226 + -0.3 663,226 + +1.7 663,226 + +0.4 663,226 + +0.7 663,485 + +0.2 663,495 + +0.4 663,522 - +0.1 663,551 + -0.5 663,593 - -0.5 663,625 - -0.1 663,625 - +0.4 663,627 + -0.0 663,627 + +0.9 663,932 - Shew_0586 0.30 -0.1 664,125 + Shew_0586 0.55 +0.5 664,238 - Shew_0586 0.70 +0.7
Or see this region's nucleotide sequence