Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0382 and Shew_0383 are separated by 179 nucleotides Shew_0383 and Shew_0384 are separated by 174 nucleotides
Shew_0382: Shew_0382 - nuclease (RefSeq), at 431,735 to 432,505
_0382
Shew_0383: Shew_0383 - malate dehydrogenase (RefSeq), at 432,685 to 433,932
_0383
Shew_0384: Shew_0384 - regulatory protein CsrD (RefSeq), at 434,107 to 436,017
_0384
Position (kb) 432
433
434 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 431.765 kb on - strand at 431.928 kb on + strand, within Shew_0382 at 431.928 kb on + strand, within Shew_0382 at 431.928 kb on + strand, within Shew_0382 at 431.928 kb on + strand, within Shew_0382 at 431.928 kb on + strand, within Shew_0382 at 431.928 kb on + strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 431.936 kb on - strand, within Shew_0382 at 432.098 kb on - strand, within Shew_0382 at 432.583 kb on + strand at 432.591 kb on - strand at 432.792 kb on + strand at 433.246 kb on + strand, within Shew_0383 at 433.254 kb on - strand, within Shew_0383 at 433.498 kb on + strand, within Shew_0383 at 433.817 kb on + strand at 433.875 kb on - strand at 433.901 kb on + strand at 433.909 kb on - strand at 434.583 kb on + strand, within Shew_0384 at 434.662 kb on + strand, within Shew_0384 at 434.670 kb on - strand, within Shew_0384 at 434.670 kb on - strand, within Shew_0384 at 434.908 kb on - strand, within Shew_0384
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 431,765 - -0.8 431,928 + Shew_0382 0.25 +0.2 431,928 + Shew_0382 0.25 -1.9 431,928 + Shew_0382 0.25 +0.1 431,928 + Shew_0382 0.25 +0.3 431,928 + Shew_0382 0.25 -0.6 431,928 + Shew_0382 0.25 -0.3 431,936 - Shew_0382 0.26 +0.5 431,936 - Shew_0382 0.26 +0.7 431,936 - Shew_0382 0.26 +0.4 431,936 - Shew_0382 0.26 +0.3 431,936 - Shew_0382 0.26 +0.0 431,936 - Shew_0382 0.26 -0.1 431,936 - Shew_0382 0.26 -0.0 432,098 - Shew_0382 0.47 +0.1 432,583 + +1.9 432,591 - +1.5 432,792 + +2.0 433,246 + Shew_0383 0.45 +2.1 433,254 - Shew_0383 0.46 +1.8 433,498 + Shew_0383 0.65 +1.9 433,817 + +2.0 433,875 - +3.6 433,901 + -0.1 433,909 - -0.2 434,583 + Shew_0384 0.25 -1.2 434,662 + Shew_0384 0.29 -1.4 434,670 - Shew_0384 0.29 -1.3 434,670 - Shew_0384 0.29 -0.8 434,908 - Shew_0384 0.42 -0.8
Or see this region's nucleotide sequence