Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0348 and Shew_0349 are separated by 81 nucleotides Shew_0349 and Shew_0350 are separated by 66 nucleotides Shew_0350 and Shew_0351 are separated by 28 nucleotides
Shew_0348: Shew_0348 - cytochrome c, putative (RefSeq), at 396,809 to 398,848
_0348
Shew_0349: Shew_0349 - rhodanese domain-containing protein (RefSeq), at 398,930 to 399,355
_0349
Shew_0350: Shew_0350 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 399,422 to 400,225
_0350
Shew_0351: Shew_0351 - TPR repeat-containing protein (RefSeq), at 400,254 to 400,946
_0351
Position (kb) 398
399
400 Strain fitness (log2 ratio) -2
-1
0
1 at 398.075 kb on - strand, within Shew_0348 at 398.410 kb on + strand, within Shew_0348 at 398.847 kb on - strand at 399.136 kb on + strand, within Shew_0349 at 399.222 kb on + strand, within Shew_0349 at 399.272 kb on + strand, within Shew_0349 at 399.484 kb on - strand at 399.485 kb on - strand at 399.485 kb on - strand at 399.485 kb on - strand at 399.490 kb on - strand at 399.495 kb on - strand at 399.630 kb on - strand, within Shew_0350 at 399.669 kb on - strand, within Shew_0350 at 399.766 kb on - strand, within Shew_0350 at 399.884 kb on - strand, within Shew_0350 at 399.891 kb on + strand, within Shew_0350 at 399.899 kb on - strand, within Shew_0350 at 399.899 kb on - strand, within Shew_0350 at 399.923 kb on - strand, within Shew_0350 at 399.959 kb on - strand, within Shew_0350 at 400.107 kb on - strand, within Shew_0350 at 400.146 kb on - strand at 400.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 398,075 - Shew_0348 0.62 +0.4 398,410 + Shew_0348 0.78 +0.6 398,847 - -0.8 399,136 + Shew_0349 0.48 -0.4 399,222 + Shew_0349 0.69 -1.2 399,272 + Shew_0349 0.80 -0.2 399,484 - -0.0 399,485 - -0.1 399,485 - -0.8 399,485 - -0.0 399,490 - +0.3 399,495 - +0.4 399,630 - Shew_0350 0.26 +0.0 399,669 - Shew_0350 0.31 +0.3 399,766 - Shew_0350 0.43 -1.8 399,884 - Shew_0350 0.57 +0.3 399,891 + Shew_0350 0.58 -0.1 399,899 - Shew_0350 0.59 +0.1 399,899 - Shew_0350 0.59 +0.5 399,923 - Shew_0350 0.62 +0.4 399,959 - Shew_0350 0.67 -1.5 400,107 - Shew_0350 0.85 +0.1 400,146 - +0.3 400,284 + -0.4
Or see this region's nucleotide sequence