Experiment: Doxycycline hyclate 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0029 and Shew_0030 are separated by 147 nucleotides Shew_0030 and Shew_0031 are separated by 424 nucleotides
Shew_0029: Shew_0029 - 3-methyladenine DNA glycosylase (RefSeq), at 31,239 to 31,928
_0029
Shew_0030: Shew_0030 - hypothetical protein (RefSeq), at 32,076 to 32,831
_0030
Shew_0031: Shew_0031 - RND family efflux transporter MFP subunit (RefSeq), at 33,256 to 34,416
_0031
Position (kb) 32
33 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 31.272 kb on - strand at 31.658 kb on + strand, within Shew_0029 at 31.658 kb on + strand, within Shew_0029 at 31.658 kb on + strand, within Shew_0029 at 31.658 kb on + strand, within Shew_0029 at 31.666 kb on - strand, within Shew_0029 at 31.893 kb on + strand at 31.908 kb on - strand at 31.936 kb on - strand at 32.142 kb on - strand at 32.285 kb on + strand, within Shew_0030 at 32.293 kb on - strand, within Shew_0030 at 32.293 kb on - strand, within Shew_0030 at 32.336 kb on - strand, within Shew_0030 at 32.585 kb on + strand, within Shew_0030 at 32.604 kb on + strand, within Shew_0030 at 32.815 kb on - strand at 32.815 kb on - strand at 32.862 kb on - strand at 33.122 kb on + strand at 33.148 kb on + strand at 33.374 kb on - strand, within Shew_0031 at 33.426 kb on + strand, within Shew_0031 at 33.432 kb on + strand, within Shew_0031 at 33.526 kb on - strand, within Shew_0031 at 33.559 kb on + strand, within Shew_0031 at 33.588 kb on - strand, within Shew_0031 at 33.618 kb on + strand, within Shew_0031 at 33.626 kb on - strand, within Shew_0031 at 33.626 kb on - strand, within Shew_0031
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 10 mg/ml remove 31,272 - +0.4 31,658 + Shew_0029 0.61 -0.2 31,658 + Shew_0029 0.61 -0.3 31,658 + Shew_0029 0.61 -0.3 31,658 + Shew_0029 0.61 +0.5 31,666 - Shew_0029 0.62 +0.0 31,893 + -0.0 31,908 - +0.0 31,936 - +0.1 32,142 - +2.2 32,285 + Shew_0030 0.28 -0.4 32,293 - Shew_0030 0.29 -0.3 32,293 - Shew_0030 0.29 +0.2 32,336 - Shew_0030 0.34 -0.3 32,585 + Shew_0030 0.67 -0.2 32,604 + Shew_0030 0.70 -0.5 32,815 - +0.0 32,815 - +0.0 32,862 - -0.2 33,122 + -4.8 33,148 + -6.4 33,374 - Shew_0031 0.10 -1.0 33,426 + Shew_0031 0.15 -5.4 33,432 + Shew_0031 0.15 -6.8 33,526 - Shew_0031 0.23 -5.9 33,559 + Shew_0031 0.26 -5.4 33,588 - Shew_0031 0.29 -6.9 33,618 + Shew_0031 0.31 -7.2 33,626 - Shew_0031 0.32 -3.9 33,626 - Shew_0031 0.32 -4.8
Or see this region's nucleotide sequence